Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq34 176 1e-38 seq7 156 1e-32 >seq34 Length=267493 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | |||||| |||||||| || |||||||| ||||||| |||||| Sbjct 242643 CGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTT 242584 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || |||||||| || |||||||| || || || || |||||||| | ||| Sbjct 242583 CGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCC 242524 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || ||||| | Sbjct 242523 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAG 242464 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| ||||| ||||| || ||||| || || Sbjct 242463 GTGATGGTCTTCCCCGTAAGGGTCTTAACGAA 242432 >seq7 Length=945956 Score = 156 bits (172), Expect = 1e-32 Identities = 136/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| || || | ||||| | |||||| || |||||||| || ||||||| Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | | ||||| || |||||||| | ||| ||||||||||||||||| |||||||| | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||| || |||||| || |||||||| |||||||||||||| ||||| Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAG 573744 Score = 152 bits (168), Expect = 1e-31 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| ||||| | ||| || | |||||| || || ||||| || ||||||| Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || ||||| || |||||||| | ||| |||||||| |||||||| || ||||| | Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||||||||| ||| || |||||||| ||||| |||||||| ||||| Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAG 575317 Score = 132 bits (146), Expect = 1e-25 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | | || | || || || |||||||| || |||||||| Sbjct 574760 TTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGATC 574819 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||||||||| | || ||||| ||||||||||| ||| ||||| ||| Sbjct 574820 AATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCTTTGACGTTGTCG 574879 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || ||||| || |||||||||||||||||| |||||||| |||||| Sbjct 574880 ATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAGA 574927 Score = 129 bits (142), Expect = 1e-24 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| || |||| || || | ||||| || |||||||| || ||||||| Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || ||||| |||||||| | ||| ||||||||||| ||||| ||| ||||| | Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 |||| ||||| ||| || || || || ||||| |||||||| || || Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| ||||| | || || | || || || |||||||| || ||||| || Sbjct 573969 TTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATG 574028 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| ||||| | ||| ||||| ||||||||||| || ||||| ||| Sbjct 574029 AGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCG 574088 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 |||||||| || ||| |||||||| ||||| |||||||| || Sbjct 574089 ATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 574132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149787106385