Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq34 131 4e-25 seq7 123 6e-23 seq15 100 7e-16 >seq34 Length=267493 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| || ||||| || || |||| |||||||| | | ||| Sbjct 242643 CGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTT 242584 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||||||||| ||||| || || || || || || || Sbjct 242583 CGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCC 242524 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| || | ||||| || || Sbjct 242523 TCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAG 242464 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| ||||| Sbjct 242463 GTGATGGTCTTCCCCGT 242447 >seq7 Length=945956 Score = 123 bits (136), Expect = 6e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| |||||||||| | ||||| ||||| || || ||||| |||||||||| Sbjct 575149 CTTTCTGGATGTTGTAATCGGAAAGAGTTCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 575208 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | |||||||| || || || || || || ||||||||||||||||| ||| || | Sbjct 575209 TGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGT 575268 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||||| |||| || || || | ||||| ||||| || || Sbjct 575269 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 575314 Score = 111 bits (122), Expect = 4e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| ||||| |||| | |||| ||||| || |||||||| |||||||||| Sbjct 573576 CTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGA 573635 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | |||||| || || || || || || |||||||| |||||||| |||||| | Sbjct 573636 TCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT 573695 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| || || |||| || || || | ||||||||||| || || Sbjct 573696 CGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGT 573741 Score = 109 bits (120), Expect = 1e-18 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| |||||||| | | |||| || || || |||||||| || ||||| || Sbjct 573969 TTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATG 574028 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| || |||||||| || || || ||||| || |||||||| ||| || ||| Sbjct 574029 AGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGTCG 574088 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||||| || | ||| || || | |||||| ||||| || |||||| Sbjct 574089 ATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCAAA 574136 Score = 96.9 bits (106), Expect = 8e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | ||||| || | | ||||| ||||| || ||||||||||| ||||||| Sbjct 574369 CTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGGCGAAGA 574428 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | ||||| ||||| || || || || || |||||||| || ||||| || || | Sbjct 574429 TGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTAT 574488 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||||| |||| || || || | ||||| ||||| || || Sbjct 574489 CGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGT 574534 >seq15 Length=705085 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 || ||||| | ||| || || || || || |||| |||||||| | | |||| || Sbjct 440260 CTGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCG 440319 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 || || |||||||| || |||||||| ||||| || ||||| || || ||||| |||||| Sbjct 440320 TCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTG 440379 Query 225619 TCTTGGATCT 225628 |||||||||| Sbjct 440380 TCTTGGATCT 440389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528923383406