Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq34 123 2e-23 seq7 104 2e-17 >seq34 Length=267493 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||| | || || | || || Sbjct 242631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 242572 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | ||| | || ||||| ||| Sbjct 242571 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGG 242512 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||||| || || ||||| Sbjct 242511 ATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 242452 Query 44309 CCCGTGAGGGTCTTCACGAAGAT 44331 ||||| |||||||| |||||||| Sbjct 242451 CCCGTAAGGGTCTTAACGAAGAT 242429 >seq7 Length=945956 Score = 104 bits (114), Expect = 2e-17 Identities = 129/172 (75%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||| ||||||||||| |||| | ||| || |||| || |||||||| ||||| || Sbjct 574758 CCTTCTGGATGTTGTAGTCGGACAACGTT--CGACCGTCCTCGAGCTGCTTTCCGGCGAA 574815 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | ||| | ||| ||||| ||| ||||| |||| | || Sbjct 574816 GATCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTT-GGCTTTGACGT 574874 Query 44266 T-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 | | || ||||||| ||||| ||||| | || || |||||||| ||||| Sbjct 574875 TGTCGATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| | |||| || |||| || |||||||| ||||| || | Sbjct 573967 CCTTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 574026 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 | | |||||||| || | ||| | || ||||| ||| |||||| ||| | | Sbjct 574027 TGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCCTGGATCTTCGCCTTGACGTTGT 574086 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 | |||||||| | ||||| ||||| | ||| || |||||||| || Sbjct 574087 CGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGT 574132 Score = 93.3 bits (102), Expect = 3e-14 Identities = 124/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| |||| ||| || | || || |||||||| || || ||| Sbjct 573575 CCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAG 573634 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| || |||||||| | ||| | || ||||| ||| ||||| ||||| | Sbjct 573635 ATCAATCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG 573694 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | || || || | ||| || ||||| | || ||||||||||| |||||| Sbjct 573695 TCGATAGTATCAGAGGACTCGACCTCGAGGGTGATCGTCTTTCCAGTGAGG 573745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 44143 GCTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201 |||| ||||| || |||||||| || | ||| || | || || ||||||||||||| Sbjct 574363 GCTCACCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGG 574422 Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | ||||| | ||||| ||||| | ||| | || ||||| ||| ||||| |||| Sbjct 574423 CGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCCTGAATCTT-GGCTTTG 574481 Query 44262 ATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | ||| | || ||||||| ||| || || |||| || || |||||||| || ||| Sbjct 574482 ACGTTATCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAGG 574538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 128/178 (72%), Gaps = 5/178 (3%) Strand=Plus/Plus Query 44143 GCTCTCCTTT-TGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 |||| ||||| |||||||||||||||| ||||| || | || || || ||||| || Sbjct 575143 GCTCACCTTTCTGGATGTTGTAATCGGAAAGAGTT--CGTCCATCCTCAAGTTGCTTTCC 575200 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 || ||||| | || |||||||| | ||| | || ||||| || ||||| ||| Sbjct 575201 AGCGAAGATGAGTCGTTGCTGATCAGGAGGGATTCCCTCCTTGTCTTGGATCTTAGCCTT 575260 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | | | |||||||||| ||| || ||||| | || || |||||||| |||||| Sbjct 575261 GACGTTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGG 575318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989746279933