Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7 165 2e-35 seq34 159 8e-34 seq15 102 2e-16 >seq7 Length=945956 Score = 165 bits (182), Expect = 2e-35 Identities = 138/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || |||||||||||||| || ||| ||||||||||| |||||||| Sbjct 575317 CTCACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAACGTCAAG 575258 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| || ||||||||||| || ||||||||||| |||||||| ||| Sbjct 575257 GCTAAGATCCAAGACAAGGAGGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 575198 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || || || || |||||| | |||||| ||||||| ||| |||| |||| Sbjct 575197 AAGCAACTTGAGGATGGACGAACTCTTTCCGATTACAACATCCAGAAAG 575149 Score = 152 bits (168), Expect = 1e-31 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| ||||||||||||||||| || ||| || || ||||| ||||| || Sbjct 573744 CTCACTGGAAAGACGATCACCCTCGAGGTCGAGTCCTCTGATACTATCGACAACGTGAAG 573685 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| || ||||||||||| || ||||||||| | |||||||| ||| Sbjct 573684 GCCAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAACGATTGATCTTCGCTGGA 573625 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || |||||||| |||||| | || || |||| || ||| |||| |||| Sbjct 573624 AAGCAGCTCGAGGATGGACGAACCCTCTCCGACTACAACATCCAGAAAG 573576 Score = 138 bits (152), Expect = 3e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || ||||| || ||||| |||||||| ||| || ||||||||||| |||||||| Sbjct 574132 ACCGGAAAGACCATCACGCTCGAGGTCGAATCGTCGGACACCATCGACAACGTCAAGGCG 574073 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| ||||| || || ||||||||||| |||||||| ||||| || ||||||||||| Sbjct 574072 AAGATCCAGGATAAGGAGGGAATCCCTCCCGACCAGCAGCGACTCATTTTCGCCGGAAAG 574013 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || | || || | ||||| ||| |||| || Sbjct 574012 CAGCTCGAGGACGGTCGAACACTCTCTGATTACAACATCCAGAA 573969 Score = 136 bits (150), Expect = 1e-26 Identities = 131/168 (78%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| ||||| || ||||| |||||||| ||| || ||||| ||||| |||||||| Sbjct 574927 TCTCACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACGATCGACAACGTCAA 574868 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 | ||||| ||||| || || || |||||||| |||||||| ||| | ||||||||||| Sbjct 574867 AGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGATTGATCTTCGCCGG 574808 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||| |||||||| || || | || | |||| || ||| |||| || Sbjct 574807 AAAGCAGCTCGAGGACGGTCGAACGTTGTCCGACTACAACATCCAGAA 574760 Score = 134 bits (148), Expect = 3e-26 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || |||||||| || || || ||| ||||| ||||| ||||||||| Sbjct 574537 CTTACCGGAAAGACCATCACCCTGGAAGTCGAGTCCTCCGACACGATCGATAACGTCAAA 574478 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || ||||||||||| || || || ||||| ||||||||||| Sbjct 574477 GCCAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCCGGG 574418 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || ||||| || ||||| | ||||| | || || ||| | || |||| Sbjct 574417 AAGCAGCTTGAGGATGGTCGAACTCTCTCGGACTACAACATTCAGAAAG 574369 >seq34 Length=267493 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || || || || || || |||||| | |||||||| || |||||| Sbjct 242429 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 242488 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| || ||||||||||| || ||||| ||| Sbjct 242489 ATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCTCCTGATCAGCAGCGA 242548 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||||||| ||||| |||||||| |||||| | || ||| | ||||| ||| |||| Sbjct 242549 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 242608 Query 178107 AAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || |||| || Sbjct 242609 AAGGAGTCCACCCTTCA-CTTGGTT 242632 >seq15 Length=705085 Score = 102 bits (112), Expect = 2e-16 Identities = 97/123 (79%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| || || ||||| || |||||||| ||||| |||||||||||||| | Sbjct 440389 AGATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGACTCATCTTCGCCGGAAAGC 440330 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||| || ||| | || ||| | ||||| ||| |||| || || || || || || | Sbjct 440329 AGCTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCGACCCTTCA-C 440271 Query 178126 TTG 178128 ||| Sbjct 440270 TTG 440268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203728902001906