Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20frigida_20[genbank_20GCA_5F001600395.1_202016-03-01] 149 sequences; 28,616,317 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq34 109 5e-19 seq15 89.7 5e-13 seq7 86.0 6e-12 >seq34 Length=267493 Score = 109 bits (120), Expect = 5e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || || || Sbjct 242649 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 242590 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| || || ||||| || || | || Sbjct 242589 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 242530 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | ||||| |||||||| Sbjct 242529 ATTCCCTCCTTGTCC-TGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 242471 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 242470 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 242427 >seq15 Length=705085 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || || || ||||| || |||| ||||||||||| |||||||| Sbjct 440283 CTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 440342 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| ||||| | ||| | | ||||||||| Sbjct 440343 GATGAGTCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 440381 >seq7 Length=945956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 41668 GCTCTCCTT-CTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGG 41726 |||| |||| ||||||||| ||||| ||||| || || | || || |||||||| |||| Sbjct 574363 GCTCACCTTTCTGAATGTTGTAGTCCGAGAGAGTTCGACCATCCTCAAGCTGCTTCCCGG 574422 Query 41727 CGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCA 41786 |||| || || |||||||| || | || | | |||||||||| ||| | || |||| Sbjct 574423 CGAAGATGAGTCGCTGTTGATCAGGAGGGATTCCCTCCTTGTCC-TGAATCTTGGCTTTG 574481 Query 41787 ACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 ||| | | |||||| ||||| || |||| || || || || || || || Sbjct 574482 ACGTTATCGATCGTGTCGGAGGACTCGACTTCCAGGGTGATGGTCTTTCCGGTAAG 574537 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| | || || |||| ||||||||||| |||||||| | Sbjct 574758 CCTTCTGGATGTTGTAGTCGGACAACGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAGA 574817 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| ||||| ||||| | || | | |||||| ||| || | || |||| ||| | Sbjct 574818 TCAATCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC-TGGATCTTGGCTTTGACGTTG 574876 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | | |||||| ||| || ||||| | || || || || || || || Sbjct 574877 TCGATCGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTGAG 574926 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| || || ||||| || || |||| ||||||||||| |||||||| | Sbjct 573967 CCTTCTGGATGTTGTAATCAGAGAGTGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 574026 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||| ||||| | || | | |||||| ||| || | || || | ||| | Sbjct 574027 TGAGTCGCTGCTGGTCGGGAGGGATTCCCTCCTTATCC-TGGATCTTCGCCTTGACGTTG 574085 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCA 41840 | | ||||| ||| || ||||| | ||| || || || || |||| Sbjct 574086 TCGATGGTGTCCGACGATTCGACCTCGAGCGTGATGGTCTTTCCGGTCA 574134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303138958800