Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq57 132 5e-26 seq1777 111 2e-19 seq601 111 2e-19 seq1142 95.1 1e-14 >seq57 Length=51515 Score = 132 bits (146), Expect = 5e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || |||||| | || ||| || |||||| ||||| || Sbjct 1437 AAGGCCGATTGGGCTCTCAAGTGGATCTCGTCCAAGGAGTCCACCTTCGCTGAGCGACTC 1378 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || |||||| | ||||||||||| ||||||| || || ||||| |||| || ||| Sbjct 1377 GTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCTGG 1318 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || || || |||||||| || || ||| ||||||| | ||||| |||||| Sbjct 1317 CTCAAGAAGCGAGGACTAATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGAC 1258 Query 117164 GAGGGTCTGCA 117174 ||||| || || Sbjct 1257 GAGGGACTTCA 1247 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || |||||| ||||| || || || ||||| || |||||| |||||||||||||| Sbjct 1840 CACTTCATCTCCCACGTCCTCGCTTTCTTCGCTGCTTCCGACGGTATCGTCAACGAGAAC 1781 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || ||||||| ||| | |||||||| ||| |||||||| || ||||||||||| || Sbjct 1780 CTCATCGAGCGATTCTCGCAGGAGGTTCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTC 1721 Query 116861 CAGATC 116866 |||||| Sbjct 1720 CAGATC 1715 >seq1777 Length=56666 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||||| || || || ||||| || ||||||||| | || || || | | |||| | Sbjct 24878 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 24819 Query 40756 GTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | |||| |||||| || || | ||||| ||||| ||||| | || ||||| || Sbjct 24818 ATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCG 24760 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 |||||||| ||| || || ||||| || || | || ||||| || ||||||||||| Sbjct 24759 ACTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCA 24700 Query 40875 GAAGGAGGCCACGCTGCA 40892 ||||||| |||| || || Sbjct 24699 GAAGGAGTCCACCCTTCA 24682 >seq601 Length=43053 Score = 111 bits (122), Expect = 2e-19 Identities = 127/168 (76%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 28286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 28344 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| || || ||||| | || |||||||||||||||| ||| || Sbjct 28345 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 28404 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || || || || |||| || |||||| ||| |||||||||||||| Sbjct 28405 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAA 28452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||| ||| |||| ||||| || |||||| | | | |||| |||| Sbjct 29888 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACG-TCAA 29946 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 29947 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 30006 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || ||||| || || | || || ||| ||||||||||||||||| Sbjct 30007 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAA 30054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| |||| ||||| | |||| | | | |||| |||| Sbjct 29068 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACG-TCAA 29126 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || |||| ||||| ||||| || || | ||||| || |||||||||| ||| || Sbjct 29127 AGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGG 29186 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || || | || ||||| |||||||||||||||||||| Sbjct 29187 AAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 29236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| |||| || ||| | |||||| | | | |||| |||| Sbjct 28676 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACG-TCAA 28734 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | || ||||| ||| | || | ||| || Sbjct 28735 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCCGG 28794 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || |||| || || | |||||||||||||||||||| Sbjct 28795 AAAGCAGCTCGAGGACGGTCGAACTTTGTCCGACTACAACATCCAGAAGG 28844 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || |||||||| | || ||||| || | |||| | | | |||| |||| Sbjct 29459 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACG-TCAA 29517 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | || || ||||| ||||| | |||||||| ||| | |||| ||| || Sbjct 29518 GGCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 29577 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 || ||||| || || | || || ||| || |||||||||||||||| Sbjct 29578 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 29627 >seq1142 Length=33869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | || ||||| |||||||||| ||| || || ||||| || Sbjct 6860 GACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAGCTCGAG 6919 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| || ||||| || |||||||||||||||||| |||| || || Sbjct 6920 GACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCA 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206480526000