Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1777 118 9e-22 seq1142 104 2e-17 seq601 98.7 9e-16 >seq1777 Length=56666 Score = 118 bits (130), Expect = 9e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || ||||||||||| | || || ||||||| Sbjct 24676 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 24735 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||||||| ||||||| ||||||||||| ||||| || ||||||||||| Sbjct 24736 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 24795 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||||| ||| ||||| | ||| | || || Sbjct 24796 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 24855 Query 118710 CCGGTCAGAGTTTTTACAAAAATCT 118734 || || || || || || || |||| Sbjct 24856 CCCGTAAGGGTCTTAACGAAGATCT 24880 >seq1142 Length=33869 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || | |||||||||| || ||||| || || ||||||||||| Sbjct 6995 TACCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCG 6936 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||||||||||| ||||| ||| ||||||| ||||||||||| || | Sbjct 6935 AAAGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGG 6876 Query 118630 GTATGCCCTCCTTGTCT 118646 | || |||||||||||| Sbjct 6875 GGATACCCTCCTTGTCT 6859 >seq601 Length=43053 Score = 98.7 bits (108), Expect = 9e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||||||| | || || |||||||| || ||||||||| ||| Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| || |||||||| ||||| || || |||||||| || || || || | | Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| |||||| | | ||||||||||| ||| | || || ||||| || Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||| || |||||||| || | ||| || |||||||||||| ||||||||| ||| Sbjct 30056 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 29997 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||||| || ||||| || |||||||| || || || || || | | Sbjct 29996 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 29937 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| |||||| | | ||||||||||| ||| | || || || || || Sbjct 29936 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAG 29888 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || ||||||||||| | ||| || |||||||||||| ||||||||| |||| Sbjct 29625 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 29566 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || ||||| || |||||||| || || || || || | ||| Sbjct 29565 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 29506 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 | |||||||| | |||||| || | || | || || ||||| || Sbjct 29505 ATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAG 29459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819957566700