Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1777 100 2e-16 seq601 86.0 5e-12 >seq1777 Length=56666 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| || || || | || || Sbjct 24676 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 24735 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | ||||| || || ||||| | ||||||||||||| Sbjct 24736 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 24795 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| | ||||||||||| ||| || ||||| Sbjct 24796 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 24855 Query 45308 CCCGTCAGAGTCTTCACAAAGAT 45330 ||||| || ||||| || ||||| Sbjct 24856 CCCGTAAGGGTCTTAACGAAGAT 24878 >seq601 Length=43053 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||| |||||||||||| || ||| ||| |||| || || || ||||||||||| Sbjct 28844 CCTTCTGGATGTTGTAGTCGGACAAAGTT--CGACCGTCCTCGAGCTGCTTTCCGGCGAA 28787 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 ||||| ||||| || || ||||| | ||||||||| ||| Sbjct 28786 AATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCC 28747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065690416475