Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57 113 6e-20 >seq57 Length=51515 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 ||||| ||| || ||||| || || || || |||||||| ||||| |||||||||| Sbjct 1239 AATCGGTGTGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCA 1298 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 |||| || ||||| || ||||| || || || || || |||||||| ||||||||||| | Sbjct 1299 TTAGTCCTCGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCT 1358 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATG-----TATCCA 42246 | || || | ||||| | |||| ||| | || | ||| | || ||||| Sbjct 1359 CGACGGCGGAGAAGGCGACGAGTCGCTCAGC-GAAGGTGGACT-CCTTGGACGAGATCCA 1416 Query 42247 CTTTTGAGCCCAATCGGCCTT 42267 ||| |||||||||||||||| Sbjct 1417 CTTGAGAGCCCAATCGGCCTT 1437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122631251000