Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq601 113 1e-19 seq1777 102 2e-16 >seq601 Length=43053 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || | ||||| |||||| || || || ||||| || ||||| Sbjct 28842 TTCTGGATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATC 28783 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 | | ||| ||||||||||| || || || |||||||| ||||| || || || || || Sbjct 28782 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 28723 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | ||| ||| | ||| ||||| || || || ||||| || ||||| Sbjct 28722 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||| || || |||| || ||||| || || ||||| || || || Sbjct 29234 TTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATG 29175 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | |||||| |||||||| || || || || ||||||||||| ||||| || || || Sbjct 29174 AGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCG 29115 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | |||||| || || ||||| || || || ||||| ||||| || Sbjct 29114 ATAGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 Score = 111 bits (122), Expect = 4e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 ||||||| || || || || || || |||| ||||| || ||||| |||||||| || | Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | || ||||||||||| |||||||| || ||||| ||||| || || || || | Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 | | ||| ||| | || ||||| || ||||| ||||| || || || Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 >seq1777 Length=56666 Score = 102 bits (112), Expect = 2e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||| || | ||| || | || | || || || ||||| || || || || || Sbjct 24657 TCCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 24716 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || |||| || || || || || |||||||| || || || | ||| ||||||||||| Sbjct 24717 AAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGG 24776 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || || || || ||||| ||||| || || || || || | ||| || || || || Sbjct 24777 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 24836 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCT 104555 ||| | || || ||||| || ||||| || || || || |||| Sbjct 24837 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 24880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369264223300