Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq601 100 3e-16 seq1777 96.9 3e-15 >seq601 Length=43053 Score = 100 bits (110), Expect = 3e-16 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 131045 CCTTT-TGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || |||||||||||| | ||| || |||||| || ||||| || ||| || Sbjct 28455 CCTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAG 28396 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || | || ||||| || |||||||||||||| ||||| ||| || ||||| | Sbjct 28395 ATGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTA 28336 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 || | || |||| |||||||| |||| ||||| ||| || ||||| || Sbjct 28335 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| || ||||||||||| ||||||||||| || || Sbjct 30021 TCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTA 29962 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| |||||||| |||| ||||| | Sbjct 29961 TCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATG 29902 Query 131200 GTTTTACCGGTTAG 131213 || || || || || Sbjct 29901 GTCTTTCCAGTGAG 29888 >seq1777 Length=56666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | ||| |||||||| || ||||||||||| Sbjct 24658 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 24717 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| | |||||||| || |||||| Sbjct 24718 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 24777 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 24778 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 24837 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 || | ||| | ||| || || || || || || ||||| |||| Sbjct 24838 TCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 24880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472001147184000