Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1142 96.9 3e-15 seq1777 93.3 4e-14 seq601 93.3 4e-14 >seq1142 Length=33869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || ||||||||||||||||| || || ||||| || || || || || ||||| || ||| Sbjct 6854 ATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGCAG 6913 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 | ||||| || ||| | || ||||||||||| || || || |||||| | || || Sbjct 6914 CTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCACTTG 6973 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||| | ||| | || |||||| Sbjct 6974 GTTCTCCGACTCCGAGGAGGT 6994 >seq1777 Length=56666 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 22225 ATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACC 22284 || || ||||| || | || || || || |||| | || ||||| | | || ||| Sbjct 24878 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 24819 Query 22285 GTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGT 22344 | ||| | |||| || || || |||||||||||||| || || ||||| || || Sbjct 24818 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 24759 Query 22345 CTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAA 22404 || || || || || || ||| | |||||| || ||| | || ||||||||||| || Sbjct 24758 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 24699 Query 22405 AAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||| | || || ||| | || | || ||||| Sbjct 24698 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGG 24658 >seq601 Length=43053 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || ||||||| || || || | ||||||| | ||| | ||||| Sbjct 29071 ACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAAGCC 29130 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || ||||| || || || || ||||| || Sbjct 29131 AAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGAAAG 29190 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| | || ||| || ||| | ||||| |||||||| || || Sbjct 29191 CAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAA 29234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717897015875