Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1777 188 1e-42 seq601 136 7e-27 seq1142 107 4e-18 >seq1777 Length=56666 Score = 188 bits (208), Expect = 1e-42 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| ||||| || | |||||||| || |||||||| || |||||||| ||||| || Sbjct 24657 TCCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 24716 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | |||||| || ||||| ||||||| || || || || || Sbjct 24717 AAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGG 24776 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 24777 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 24836 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 |||||||||||||| || ||||| |||||||| ||||| |||| Sbjct 24837 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 24880 >seq601 Length=43053 Score = 136 bits (150), Expect = 7e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| |||||||| ||||||||||| || | || || || | ||||| || ||||| | Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||||| ||| || || || || || ||||||||||| || ||||| ||||||||| | Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||||||| | || || || || | ||| ||||| ||||| |||||| Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGG 28285 Score = 123 bits (136), Expect = 5e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| ||||| ||||| || | ||||| || | |||||| || ||||| || Sbjct 29625 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 29566 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || || || || ||||| || || ||||| ||||||||| ||| Sbjct 29565 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 29506 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||||| | || || ||||||| |||||||| ||||| || ||| Sbjct 29505 ATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAGG 29458 Score = 120 bits (132), Expect = 6e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| |||||||| || || ||||| || | ||||| || | |||||| || ||||| | Sbjct 30056 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 29997 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | || || ||||| || || || || ||||| || || ||||| ||||||||| | Sbjct 29996 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 29937 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||||||||| | || || || || | ||| ||||| ||||| |||||| | ||||| Sbjct 29936 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAGGCTGGAGACGA 29877 Query 68452 A 68452 | Sbjct 29876 A 29876 Score = 105 bits (116), Expect = 1e-17 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||||| | || | || || || | |||||| |||||||| || Sbjct 28842 TTCTGGATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATC 28783 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || || || || || || || ||||| || || ||||| ||||||||| ||| Sbjct 28782 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 28723 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||||| | ||||| || || | |||||||| ||||| || ||| Sbjct 28722 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAGG 28675 >seq1142 Length=33869 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || |||||||| || |||||||| ||||| || Sbjct 6993 CCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 6934 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||||| || || || || || Sbjct 6933 AGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGG 6874 Query 68355 ATGCCTTCCTTGTCTTGAATCT 68376 || || ||||||||||| |||| Sbjct 6873 ATACCCTCCTTGTCTTGGATCT 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599647447000