Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1222 125 1e-23 seq57 125 1e-23 >seq1222 Length=80008 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||| ||| |||| ||| | |||| ||||||| |||| |||||||| |||| Sbjct 59187 CCCCACAAGTCGTACTGGAGCTGACCCTGCGAGACGGGGGATCCCTGGTAGGTCGAGTAG 59246 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 | || || || || | || || | ||||| ||||||| ||||||||||||| Sbjct 59247 GCTCCCTCCTTCTCAGCGATCTCGCACGAAGCCTCGAGAGCGGCGTGGTAGATGGTCTCG 59306 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATG 244477 |||||| |||| | | ||||| | | | |||||| || | | |||||| Sbjct 59307 AAGATCTGGATGTTGAGCTTCTTGGCCTCGGGTCCGTCGAAGGGCATTCGAAGGATCATG 59366 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 ||| | ||||| ||||||||||| |||| |||||||||| ||||||| |||||||| Sbjct 59367 AAGGCATCGGCGAGTCCCTGCACTCCGACTCCGATGGGTCGGTGTCGCATGTTGGAG 59423 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| |||||||||||| ||||| || | | ||||| || ||||| ||||||||| Sbjct 59647 GCCAAGTTGCAGACGGCGACCTCGTCGGGAGCAGAGTACTCGATGATCTCCGTGCAGAGG 59706 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 ||| |||||||||| || |||| || || |||||||| |||| ||||||| || Sbjct 59707 TTAGACGACTTGATGGTTCCGAGGTTCTTCTGGTTGGACTTCTGGTTGGCGGCGTCC-TG 59765 Query 244808 TAGA 244811 |||| Sbjct 59766 TAGA 59769 >seq57 Length=51515 Score = 125 bits (138), Expect = 1e-23 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCC--GACGCAACGTTCGGCGAGAGGC 42705 ||||| || ||||| ||||| |||||| | ||| || | || |||| ||| | | Sbjct 1437 AAGGCCGATTGGGCTCTCAAGTGGATCTCG--TCCAAGGAGTCCACCTTCGCTGAGCGAC 1380 Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 | || ||||| ||||||||||||| ||||||||||| || | ||||| |||||||||| Sbjct 1379 TCGTCGCCTTCTCCGCCGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCT 1320 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| || ||| | ||||||||||| || ||||| ||||| | ||| ||| Sbjct 1319 GGCTCAAGAAGCGAGGACTA-ATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGG 1261 Query 42825 GACGAGGGGCTGCA 42838 |||||||| || || Sbjct 1260 GACGAGGGACTTCA 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315886626000