Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq601 111 4e-19 >seq601 Length=43053 Score = 111 bits (122), Expect = 4e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || || |||| ||| || |||||||| || | ||| ||||| ||||||| Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || || || ||| | ||||||||||| || |||||||| || || || ||||| | Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 | || | ||| || || || ||||| || || ||||| ||||| || Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 Score = 104 bits (114), Expect = 6e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| | || || ||||| || | || ||||| ||||| ||| Sbjct 28842 TTCTGGATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATC 28783 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| ||| | ||||| || || ||||||||||| || || || ||||| || Sbjct 28782 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 28723 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || | ||| |||||| || ||||| ||||| ||||| ||||| || Sbjct 28722 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | ||| || || || || || | || ||||| ||||||| Sbjct 30056 CTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 29997 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || | |||||||| || ||||||||||| || || || ||||| | Sbjct 29996 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTAT 29937 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 | || | ||| || || || ||||| || || ||||| || || || Sbjct 29936 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAG 29888 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || || || | ||| || || || || || | || ||||| ||||||||| Sbjct 29625 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 29566 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || | |||||||| || ||||||||||| || || || ||||| || Sbjct 29565 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 29506 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || | || || || ||||| || ||||| ||||| ||||| || Sbjct 29505 ATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAG 29459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624549214050