Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq601 111 2e-19 seq1777 105 8e-18 >seq601 Length=43053 Score = 111 bits (122), Expect = 2e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| | ||| || |||| ||||||||||| |||||||| | Sbjct 28844 CCTTCTGGATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAA 28785 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| |||||||| || | || | | |||||| ||| |||||| ||||| ||| | Sbjct 28784 TCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTG 28726 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | |||||| |||||| || || | |||||||| || || || || Sbjct 28725 TCGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 Score = 93.3 bits (102), Expect = 5e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||| || || ||||| || | || ||||||||||| || ||||| | Sbjct 29627 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 29568 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | | |||||| ||| |||||| ||||| ||| | Sbjct 29567 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTG 29509 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | ||||| || || || |||| |||||||| || || || || Sbjct 29508 TCGATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAG 29459 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || ||||| || | || ||||||||||| || ||||| Sbjct 30057 CCTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAG 29998 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| ||||||||||| | || | | |||||| ||| |||||| ||||| Sbjct 29997 ATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGA 29943 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || ||||||||||| |||||||| | Sbjct 29236 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29177 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||| ||||| | || | | |||||||||| ||||| |||| ||| | Sbjct 29176 TGAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGA-CGTTG 29118 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | || ||| || || || || | |||||||| || || ||||| Sbjct 29117 TCGATAGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 >seq1777 Length=56666 Score = 105 bits (116), Expect = 8e-18 Identities = 137/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || || || || || | || ||||||||||| || ||||| Sbjct 24693 CTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAA 24752 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||| || | || | | |||||||||| |||||| ||||| ||| Sbjct 24753 GATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 24811 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || ||||| |||| |||||||| || ||||| || || |||| Sbjct 24812 TGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAA 24871 Query 46581 CAAAGAT 46587 | ||||| Sbjct 24872 CGAAGAT 24878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224445677000