Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq57 113 5e-20 seq24 91.5 2e-13 seq1557 82.4 9e-11 >seq57 Length=51515 Score = 113 bits (124), Expect = 5e-20 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || |||| ||||| | ||| || ||| |||||| ||||| |||||| Sbjct 1247 TGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCCT 1306 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| | || |||||| |||||||| ||||| || | Sbjct 1307 CGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGCG 1366 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT--GTCGAA--CCACTTGAGAGC 119683 | ||| |||| || |||||||| || ||| || | | | ||| |||||||||||| Sbjct 1367 GAGAAGGCGACGAGTCGCTCAGCGAA-GGTGGACTCCTTGGACGAGATCCACTTGAGAGC 1425 Query 119684 CCAGTTGGCCTTACGCTCTATGCAGGGGAC 119713 ||| | |||||| || ||||||||||| Sbjct 1426 CCAATCGGCCTTTCGTCGAATGCAGGGGAC 1455 >seq24 Length=52002 Score = 91.5 bits (100), Expect = 2e-13 Identities = 274/414 (66%), Gaps = 17/414 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| || ||||| || | ||||| || |||| || | ||||| || | Sbjct 34513 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 34454 Query 11563 GCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || | ||| || ||| | || ||| |||| |||||||| || ||| || || Sbjct 34453 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 34397 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTG-----GAGGGCATACCACCTGCCGAACGCTTCT 11674 |||| |||| || ||||| ||||| || || || | ||| || | || || Sbjct 34396 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGG-ATCCACCCTTCCCA-CGAGCCT 34339 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | |||| ||||| ||||| |||||||| | ||| || || ||| | || | || Sbjct 34338 TTCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTT-CTTGGCCGTA 34280 Query 11735 -CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || | | ||| || || ||||||||||| ||||| | | Sbjct 34279 GCGAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAA 34220 Query 11794 GCAGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || || || | |||||| || || ||||| ||| ||||| |||| ||| || Sbjct 34219 CCGGAG-ACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGT 34161 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||| || || || || | |||| ||| | ||| || || ||||||||||| || Sbjct 34160 CTTTCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCC 34107 >seq1557 Length=15076 Score = 82.4 bits (90), Expect = 9e-11 Identities = 143/205 (70%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 168392 TCAACTGTGCCACCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCC 168451 ||||||| | |||| | || | |||||| | ||| || || || || || || | Sbjct 6285 TCAACTGCTCTCCCGACGCCTCTCGCACGTTGAGAAGCTTTCCTCGAAGAGGGAAGACTC 6226 Query 168452 CATAATGATCTCTACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCAC 168511 | || ||||||| || |||| | ||| || ||||| ||||| | ||| || ||||| | Sbjct 6225 CGTAGTGATCTCGTCCGACGATGTCGAGTCCGGCGACGGCGAGCGCTTTGGCGGAATCTC 6166 Query 168512 CCTCTGTCACGATGAGTGTACA---CTTTCCAGACTGTGCCGTACCAGCTTTGTTCGCAT 168568 | || || | ||||| || || |||||| | || | || ||||||||||| || | Sbjct 6165 CTTCGGTGAGAATGAGAGTGCAGAGCTTTCC-GTCTCGG--GTTCCAGCTTTGTTGGCGT 6109 Query 168569 CGTCCAATTTGGGGATACCAGTGAT 168593 | || | |||| |||||||| ||| Sbjct 6108 CTTCGAGTTTGACGATACCAGAGAT 6084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588961459655000