Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1777 111 1e-19 seq601 95.1 8e-15 seq1142 89.7 3e-13 >seq1777 Length=56666 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| || ||||||||| ||||| |||| || Sbjct 24675 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTC 24734 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| ||||| || || || ||||| ||||| || | || | ||||||||||| Sbjct 24735 GAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTG 24794 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 ||||| ||||| | | ||||| | ||| | ||| || || | ||| |||| Sbjct 24795 GATCTTGGCCTTGAC----GTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGG 24850 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 | || ||||| || ||||| || ||||||| Sbjct 24851 TCTTCCCCGTAAGGGTCTTAACGAAGATCT 24880 >seq601 Length=43053 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| ||||| |||| || ||||| |||||||| || || Sbjct 29234 TTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATG 29175 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| || ||||| | || | ||||||||||| |||||| ||||||| | Sbjct 29174 AGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCG 29115 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || | || | ||| || |||| || ||||| ||||| || || Sbjct 29114 ATAGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 >seq1142 Length=33869 Score = 89.7 bits (98), Expect = 3e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||| || ||||||||| ||||| | || || Sbjct 6976 AACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCGTCCTC 6917 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| |||||||| || || ||||| ||||| || | || | ||||||||||| Sbjct 6916 GAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGGATACCCTCCTTGTC 6860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625785967800