Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq601 152 7e-32 seq1161 105 9e-18 >seq601 Length=43053 Score = 152 bits (168), Expect = 7e-32 Identities = 137/171 (80%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| || ||||| || || ||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 28285 CCTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAA 28344 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| || || |||||||| || || || |||||||||||||| || || ||||| Sbjct 28345 GGCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGG 28404 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || || || || || ||||| |||||| | ||||||||| | || ||||| Sbjct 28405 AAAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 28455 Score = 149 bits (164), Expect = 8e-31 Identities = 135/170 (79%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| |||||||| || ||||| |||||||| ||||| || || || ||||| ||| |||| Sbjct 29067 CCTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAA 29126 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||||||| || ||||| || ||||| || || || || ||||| || || || || Sbjct 29127 AGCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGG 29186 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || ||||| ||||||||||| ||||| | || |||||| | || |||| Sbjct 29187 AAAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 29236 Score = 138 bits (152), Expect = 1e-27 Identities = 134/171 (78%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 ||| |||||||| || || ||||||||||| ||||| || ||||| ||||||||| |||| Sbjct 29887 CCTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAA 29946 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 || ||||| || |||||||| || || || || || ||||| ||| | || || ||||| Sbjct 29947 GGCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGG 30006 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCA-AAAGG 172051 || ||||| || ||||| || || ||| | || |||||| | || ||||| Sbjct 30007 AAAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 30057 Score = 136 bits (150), Expect = 5e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 171882 CCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAA 171941 |||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||| ||| |||| Sbjct 28675 CCTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAA 28734 Query 171942 AGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGG 172001 |||||||| || |||||||| || || || || |||||||| ||| | ||||| || || Sbjct 28735 GGCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCCGG 28794 Query 172002 TAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGG 172051 || ||||| || || || || || | | || |||||| | || |||| Sbjct 28795 AAAGCAGCTCGAGGACGGTCGAACTTTGTCCGACTACAACATCCAGAAGG 28844 >seq1161 Length=32145 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| |||||||| || ||||| || ||||| ||||| || || ||| || ||| Sbjct 2573 AACGACCAGGGAAACCGAACCACTCCTTCCTACGTCGCCTTCACCGACTCTGAGCGACTC 2514 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | ||||||||||| || || ||| || |||||||||| ||| | |||| ||||| Sbjct 2513 ATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTACCAACTCCATCTTCGACGCT 2454 Query 195494 AAGCGTCTTATTGGTCGCAAGTT 195516 ||||| || ||||| || ||||| Sbjct 2453 AAGCGACTCATTGGACGAAAGTT 2431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657846159022000