Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq601 87.8 3e-12 >seq601 Length=43053 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| || |||| | || || | || |||||||| ||||| |||| | Sbjct 28836 ATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATCAATCGC 28777 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||||||||| || || || ||||| || || |||| || | || || || Sbjct 28776 TGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCGATGGTG 28717 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||| || ||||| || ||||| || || || || || || Sbjct 28716 TCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| | |||| ||| || | || |||||||| || || | || | Sbjct 29228 ATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGTCGC 29169 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| |||||||| || || || || || || || |||| ||| | || |||||| Sbjct 29168 TGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCGATAGTA 29109 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||||||||| || || ||||| || || || || || || Sbjct 29108 TCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899632189782000