Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1777 111 2e-19 seq601 98.7 1e-15 seq1142 82.4 7e-11 >seq1777 Length=56666 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || |||||||| | || | | | |||||||| Sbjct 24679 AAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCA-TCCTCGAG 24737 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| |||||||| || |||||||| || |||||||| ||| Sbjct 24738 CTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGGAT 24797 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | || | ||||| | | |||||| || | ||||| ||| || || Sbjct 24798 CTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTCCC 24857 Query 133634 GGTCAGAGTTTTTACGAAAATCT 133656 || || || || ||||| |||| Sbjct 24858 CGTAAGGGTCTTAACGAAGATCT 24880 >seq601 Length=43053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 ||||||| || ||||||||| | || ||||||||| ||||| || ||| | | Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 |||| || ||||| || |||||||| ||||||||||| |||||| ||||| | | Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | | ||||||| || ||| || |||| ||| | ||| || ||||| || Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| ||| || || ||| ||||||||||||||| || ||| |||| Sbjct 28842 TTCTGGATGTTGTAGTCGGACAAAGTTCGACC-GTCCTCGAGCTGCTTTCCGGCGAAAAT 28784 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | |||||||| || |||||||| || ||||| || |||||| ||||| | || Sbjct 28783 CAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTC 28724 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 | ||||||| | || || |||| |||| ||| || ||||| || Sbjct 28723 GATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || | ||||||||||| |||||||| || ||||| Sbjct 30021 TCCTCGAGCTGCTTTCCAGCGAAGATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTA 29962 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||||| || ||| || |||| ||| | | Sbjct 29961 TCCTGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATG 29902 Query 133626 GTTTTGCCGGTCAG 133639 || || || || || Sbjct 29901 GTCTTTCCAGTGAG 29888 >seq1142 Length=33869 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/123 (76%), Gaps = 4/123 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 || || | ||||||||| ||||| || |||||||| | | | | || |||||||| Sbjct 6972 AAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC--CGAAAGGGTTCGTCCGTCCTCGA 6915 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | ||||| |||||||| || || ||||| || |||||||| || Sbjct 6914 GCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGGATACCCTCCTTGTCTTGGA 6855 Query 133573 TCT 133575 ||| Sbjct 6854 TCT 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408865549000