Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24 113 6e-20 seq57 84.2 3e-11 >seq24 Length=52002 Score = 113 bits (124), Expect = 6e-20 Identities = 299/452 (66%), Gaps = 11/452 (2%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 ||||| || || ||||| || | ||| || ||| || | || |||||||| | Sbjct 34513 CGATCGAATCGTCCTGGTCGCATGAGAGCTGGGTCGAGAACGTCCGCTCGGTTCGTTCCA 34454 Query 14123 GCGATGACAACGATGCCCGTCTCGTT--ATCA-AAGCCATCCATCTCAGTCAAGAGTTGA 14179 |||| ||| |||||| | ||||| ||| || || |||||||| | ||||||| Sbjct 34453 GCGAGGACGACGATG---GATTCGTTGGATCCGAACCCGTCCATCTCGACGAGGAGTTGA 34397 Query 14180 TTGATGGTTTGTTCGCGTTCATCATTCGCAG----GCATACCACCCGCACTGCGTTGCTT 14235 |||| || || || || || ||| || | || |||||| | || ||| Sbjct 34396 TTGAGCGTCGACTCCCGCTCGTCGTTCCCACCGAAGGAT-CCACCCTTCCCACGAGCCTT 34338 Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 |||| |||||| || || |||||||| | ||| || || || | ||| | Sbjct 34337 TCCGATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGAGCGTTCTTCTTGGCCGTAGC 34278 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 14355 |||| |||||| ||||| || ||||| || || ||||||||||| || | | | Sbjct 34277 GAAGAGATCTCGAACTCTGGAGGATCCGACTCCGACGAACATCTCCACGAACTCCGAACC 34218 Query 14356 GGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 14415 ||| || |||||| ||| || |||||| ||| ||||| ||||| ||||||||| Sbjct 34217 GGAGACGGAGAAGAAGGGCACGCCAGCTTCACCGGCGGTGGCTTTGGCGATGAGGGTCTT 34158 Query 14416 CCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGCCAAA 14475 || || || || || | ||| | ||| || || |||||| |||| || | | | Sbjct 34157 TCCGGTTCCGGGAGGTCCAGAGAGGATGGCTCCTCGAGGGATCTTGGCTCCGAGGGCGAG 34098 Query 14476 GTAGCGTTCAGGTTGTTTAAGGAAGTCCACGA 14507 | |||| | |||||||| ||||| | |||| Sbjct 34097 GAAGCGAGCGGGTTGTTTGAGGAACTTGACGA 34066 >seq57 Length=51515 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| | ||||| | || || ||||| || || ||||| || || Sbjct 1246 GTGAAGTCCCTCGTCCCTCGAGATCAACTCGTTGGAGAACGTAAGTCCGGGCATTAGTCC 1305 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | | || || |||||||||||||| ||||| || Sbjct 1306 TCGCTTCTTGAGCCAGAAGATGGAAGCGAACGATCCAGAGAAGAAGATTCCCTCGACGGC 1365 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 | ||| || | ||| |||||||| |||| Sbjct 1366 GGAGAAGGCGACGAGTCGCTCAGCGAAGG 1394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419932381000