Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq601 129 2e-24 seq1777 109 2e-18 >seq601 Length=43053 Score = 129 bits (142), Expect = 2e-24 Identities = 130/169 (77%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || ||||| || | ||||| || || || ||||| |||||||| |||| Sbjct 28454 CTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAGCGAAGA 28395 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | || ||||||||||||||||| |||||||| || ||||| || ||||| || || |||| Sbjct 28394 TGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTAT 28335 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 | || | || || | || || || || |||| ||||||||||| || Sbjct 28334 CGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAG 28286 Score = 104 bits (114), Expect = 7e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || ||||| || | ||||| ||||| || || || |||||||| ||||| Sbjct 29625 TTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGATC 29566 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || ||||| |||||||| ||||| || |||||||| || || || || || || || Sbjct 29565 AATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 29506 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || | || || | || ||||| || || | ||||||||||| || Sbjct 29505 ATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAG 29459 Score = 98.7 bits (108), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | ||||| |||||||| || || ||||| || ||||| Sbjct 29234 TTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATG 29175 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || || || ||||||||||| || || || |||||||| || ||||| || || || Sbjct 29174 AGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCG 29115 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || | ||| || | || || || || || | |||||||| || || Sbjct 29114 ATAGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 Score = 95.1 bits (104), Expect = 4e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || || ||||| || || || || || ||||| || || || Sbjct 28842 TTCTGGATGTTGTAGTCGGACAAAGTTCGACCGTCCTCGAGCTGCTTTCCGGCGAAAATC 28783 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 | || |||||||||||||| || || || |||||||| || || || || || || || Sbjct 28782 AATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTTGTCG 28723 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || | || || | |||||| || || || | ||||||||||| || Sbjct 28722 ATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAG 28676 >seq1777 Length=56666 Score = 109 bits (120), Expect = 2e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | ||||| || ||||| || || || || ||||| || | ||||| ||||| Sbjct 24673 AGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCC 24732 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || |||||||| ||||| || || |||||||||||||| || || || || ||| Sbjct 24733 TCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCC 24792 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | || || | || || || | || | ||| Sbjct 24793 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTC 24852 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCT 140733 || || || || || || || || |||| Sbjct 24853 TTCCCCGTAAGGGTCTTAACGAAGATCT 24880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515216056960925