Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1222 114 1e-20 seq57 107 2e-18 >seq1222 Length=80008 Score = 114 bits (126), Expect = 1e-20 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 79035 GATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGA 79094 |||||| || || ||| || ||| |||| |||||| ||||| |||||| || ||| Sbjct 59622 GATGAAGGTGGGGAGGGCCATCGAAGCCAAGTTGCAGACGGCGACCTCGTCGGGAGCAGA 59681 Query 79095 AACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||||| || ||||| | ||||||||||||||||| |||| |||||||||||| Sbjct 59682 GTACTCGATGATCTCCGTGCAGAGGTTAGACGACTTGATGGTTCCGAGGTTCTTCTGGTT 59741 Query 79155 GCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 | ||||| ||| ||||||| ||||| Sbjct 59742 GGACTTCTGGTTGGCGGCGTCC-TGTAG 59768 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 79671 CTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTT 79730 ||||||||| || || |||||| || |||||||| |||||||| ||||| ||||| Sbjct 60670 CTTGGAGATCATAGCACAAGACTTGAGGGTGTCGTAGATACCCTCGATGGAGTCCTCCTT 60729 Query 79731 CATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 ||| | || |||||||| ||| | ||| |||| ||||||||||||||||| Sbjct 60730 CATGGAAACGAGGAAGCACGACGAGAGCTGAGGGTGAGGAGTACCGGCGTTGAAGAG 60786 >seq57 Length=51515 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| || ||||||||||||||||| |||||| | | || ||||||||||| ||||| || Sbjct 1363 CGTCGAGGGAATCTTCTTCTCTGGATCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGAGG 1304 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 || ||||| || || | |||||||||||| |||| || |||||||||| || || Sbjct 1303 ACTAATGCCCGGACTTACGTTCTCCAACGAGTTGATCTCGAGGGACGAGGGACTTCA 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511258294000