Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1777 143 3e-29 seq601 118 1e-21 >seq1777 Length=56666 Score = 143 bits (158), Expect = 3e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| || ||||| ||||| || ||||| || || | ||||| ||||| || | | Sbjct 24878 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 24819 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 || | || | ||||| || || |||||||||||||| || ||||| || |||||||| Sbjct 24818 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 24759 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || ||||| ||||| |||||||||| || ||||| | || || || |||| Sbjct 24758 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 24699 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| ||||| ||||| | || | |||||||| || ||| Sbjct 24698 AAGGAGTCCACCCTTCACTTGGTTCTTCGTCTTCGAGGAGGA 24657 >seq601 Length=43053 Score = 118 bits (130), Expect = 1e-21 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 29888 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 29947 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 29948 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 30007 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 ||||| |||||||||| ||| || || | ||||| || |||| ||||| Sbjct 30008 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAGG 30057 Score = 116 bits (128), Expect = 4e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| ||||| || ||||| || || ||||| || | ||| | || | ||| Sbjct 29459 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACGTCAAG 29518 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || ||||| ||||||||||| ||||| ||||||||||| | || || ||||| Sbjct 29519 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 29578 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| |||||||||| ||| || || | || || || |||| |||| Sbjct 29579 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAAGG 29627 Score = 114 bits (126), Expect = 1e-20 Identities = 128/170 (75%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| ||||| || ||||| ||||| || | ||| | || | ||| Sbjct 28286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 28345 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || ||||||||||| ||||| ||||| || ||||| || || || || ||||| Sbjct 28346 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 28405 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA-AAAGG 27595 |||||||||||||| | || ||||| | || || || |||| ||||| Sbjct 28406 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAGG 28455 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||||| ||||| ||||| |||| || | || | || Sbjct 29068 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAA 29127 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||||||||||||||| |||||||| ||||| ||||| || || || || || Sbjct 29128 GCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGA 29187 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 ||||| ||||| |||| || ||||| | ||||| || |||| |||| Sbjct 29188 AAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAAGG 29236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570296320462000