Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1777 127 1e-24 seq601 107 1e-18 >seq1777 Length=56666 Score = 127 bits (140), Expect = 1e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| ||| |||||| |||||||||||||| | || || | || || Sbjct 24676 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAAAGGGTTCGTCCATCCTCG 24735 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||||| | ||| | ||| ||||| ||| Sbjct 24736 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGGATACCCTCCTTGTCCTGG 24795 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | || |||||||||| || || ||||| Sbjct 24796 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATGGTCTTC 24855 Query 44309 CCCGTGAGGGTCTTCACGAAGAT 44331 ||||| |||||||| |||||||| Sbjct 24856 CCCGTAAGGGTCTTAACGAAGAT 24878 >seq601 Length=43053 Score = 107 bits (118), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 44143 GCTCTCCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGG 44201 |||| ||||| |||||||||||||||| ||| || |||| || || ||||| || | Sbjct 28460 GCTCACCTTTCTGGATGTTGTAATCGGAGAGGGTTCGTCCGTCCTCGAGTTGCTTTCCAG 28401 Query 44202 CAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCA 44261 | ||||| | || |||||||| | ||| | |||||||| ||| ||||| ||| | Sbjct 28400 CGAAGATGAGTCGTTGCTGATCAGGAGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGA 28341 Query 44262 ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 28340 CGTTATCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCGGTGAGG 28285 Score = 102 bits (112), Expect = 6e-17 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||| ||||||||||| |||| | ||| || |||| || |||||||| ||||| || Sbjct 28844 CCTTCTGGATGTTGTAGTCGGACAAAGTT--CGACCGTCCTCGAGCTGCTTTCCGGCGAA 28787 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| ||||||||||| | ||| | ||| ||||| ||| ||||| ||| | | Sbjct 28786 AATCAATCGCTGCTGATCAGGAGGGATACCCTCCTTATCCTGGATCTTGGCCTTGACGTT 28727 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||||| ||||| | || || |||||||| || ||| Sbjct 28726 GTCGATGGTGTCGGACGATTCAACCTCGAGAGTGATGGTCTTTCCGGTAAGG 28675 Score = 98.7 bits (108), Expect = 7e-16 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | ||| || | || || |||||||| || || ||| Sbjct 30057 CCTTTCTGGATGTTGTAGTCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAG 29998 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 29997 ATCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTA 29938 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||||| ||| || ||||| | ||||| |||||||| |||||| Sbjct 29937 TCGATGGTGTCGGAGGACTCGACCTCGAGGGTAATGGTCTTTCCAGTGAGG 29887 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| | ||| || | || || |||||||| || || |||| Sbjct 29627 CCTTCTGGATGTTGTAATCCGAGAGAGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAGA 29568 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| |||||||| || | ||| | || ||||| ||| ||||| ||| | | Sbjct 29567 TCAATCGCTGCTGGTCAGGAGGGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTGT 29508 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | |||||||| | ||| || || |||| || || |||||||| || ||| Sbjct 29507 CGATGGTGTCCGAGGACTCGACTTCCAGAGTGATGGTCTTTCCGGTAAGG 29458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359981734918575