Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq601 161 2e-34 seq1777 154 4e-32 seq1142 98.7 2e-15 seq1391 95.1 3e-14 >seq601 Length=43053 Score = 161 bits (178), Expect = 2e-34 Identities = 137/169 (81%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 28286 CTCACCGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 28345 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| |||||||| |||||||||||||| || ||||||||||| |||||||| ||| Sbjct 28346 GCTAAGATCCAGGACAAGGAAGGAATCCCTCCTGATCAGCAACGACTCATCTTCGCTGGA 28405 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || || ||||| || ||| | || || ||||||| ||| |||| |||| Sbjct 28406 AAGCAACTCGAGGACGGACGAACCCTCTCCGATTACAACATCCAGAAAG 28454 Score = 149 bits (164), Expect = 2e-30 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| |||||||| || || || || ||||| ||||||||| Sbjct 29068 CTGACTGGAAAGACCATCACTCTCGAGGTCGAGTCTTCCGATACTATCGACAACGTCAAA 29127 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 |||||||||||||| || || || ||||| ||||| || ||||| |||||||||||| Sbjct 29128 GCCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAACAGCGACTCATCTTCGCCGGA 29187 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||||||| | || ||| |||| || ||| |||| || Sbjct 29188 AAGCAGCTCGAAGATGGACGAACCCTTTCCGACTACAACATCCAGAA 29234 Score = 147 bits (162), Expect = 5e-30 Identities = 134/169 (79%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| ||||| || || ||||||||||| || ||| ||||||||||| |||||||| Sbjct 29888 CTCACTGGAAAGACCATTACCCTCGAGGTCGAGTCCTCCGACACCATCGATAACGTCAAG 29947 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 29948 GCTAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 30007 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 || |||||||| ||||| | ||||| | || || ||| |||| |||| Sbjct 30008 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGACTACAACATCCAGAAAG 30056 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| || || || || ||| ||||||||||| |||||||| Sbjct 29459 CTTACCGGAAAGACCATCACTCTGGAAGTCGAGTCCTCGGACACCATCGACAACGTCAAG 29518 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || ||||||||||| |||||||| ||| | |||||||| ||| Sbjct 29519 GCCAAGATCCAGGATAAGGAGGGAATCCCTCCTGACCAGCAGCGATTGATCTTCGCTGGA 29578 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| ||||| | ||||| | ||||| ||| |||| || Sbjct 29579 AAGCAGCTCGAGGATGGTCGAACTCTCTCGGATTACAACATCCAGAA 29625 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || ||||| |||||||| ||| || ||||||||||| |||||||| Sbjct 28676 CTTACCGGAAAGACCATCACTCTCGAGGTTGAATCGTCCGACACCATCGACAACGTCAAG 28735 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| ||||| || || || |||||||| || ||||| ||| | || ||||||||| Sbjct 28736 GCCAAGATCCAGGATAAGGAGGGTATCCCTCCTGATCAGCAGCGATTGATTTTCGCCGGA 28795 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || |||||||| || || | ||| | |||| || ||| |||| || Sbjct 28796 AAGCAGCTCGAGGACGGTCGAACTTTGTCCGACTACAACATCCAGAA 28842 >seq1777 Length=56666 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| || || || || || || || |||||| | |||||||| || |||||| Sbjct 24878 ATCTTCGTTAAGACCCTTACGGGGAAGACCATCACCTTGGAGGTGGAGTCTTCGGACACC 24819 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||| |||||||| ||||| |||||||| || || |||||||| || ||||| ||| Sbjct 24818 ATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGATCAGCAGCGA 24759 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 || |||||||| ||||| |||||||| |||||| | || ||| | ||||| ||| |||| Sbjct 24758 CTCATCTTCGCTGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGATTACAACATCCAG 24699 Query 178107 AAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || |||| || Sbjct 24698 AAGGAGTCCACCCTTCA-CTTGGTT 24675 >seq1142 Length=33869 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 178006 AGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 |||| || ||||| || || ||||| || || ||||| ||||| |||||||||||||| | Sbjct 6852 AGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAGCGACTCATCTTCGCCGGAAAGC 6911 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 ||||||| || ||| | || ||| | ||||| ||| |||| || || || || || || Sbjct 6912 AGCTCGAGGACGGACGAACCCTTTCGGATTACAACATCCAGAAGGAGTCCACCCTCCACT 6971 Query 178126 TTGTTTTGAGACTCAGA 178142 | ||| | ||||| || Sbjct 6972 TGGTTCTCCGACTCCGA 6988 >seq1391 Length=20505 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 |||||| ||||| ||||| ||| |||| | | |||||| |||||| | ||||||||| Sbjct 10905 GAAAGCAGCGACACTATCGACAACATCAAGAACAGGATTCAAGACAAACAGGGAATCCCT 10846 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTT 178088 || || || ||||| || |||||||| || | ||| ||||| ||||| | |||||| Sbjct 10845 CCAGATCAACAACGTCTCATCTTCGCAGGGAGACACCTCGAGGATGGCCGAACTCTT 10789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203700739958150