Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mrakia_20psychrophila_20[genbank_20GCA_5F001889225.1_202016-12-05] 1,975 sequences; 27,770,102 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq601 111 1e-19 seq1777 109 5e-19 seq1142 89.7 5e-13 >seq601 Length=43053 Score = 111 bits (122), Expect = 1e-19 Identities = 128/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || ||||||||||| |||||||| | Sbjct 29236 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29177 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 | || ||||||||||| | |||| | |||||||||| ||| | || |||| ||| | Sbjct 29176 TGAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCC-TGAATCTTGGCTTTGACGTTG 29118 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | | ||| ||| ||||| ||||| | || || || || || ||||| Sbjct 29117 TCGATAGTATCGGAAGACTCGACCTCGAGAGTGATGGTCTTTCCAGTCAG 29068 >seq1777 Length=56666 Score = 109 bits (120), Expect = 5e-19 Identities = 160/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| || || || Sbjct 24658 CCTCCTCGAAGACGAAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 24717 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| || || ||||| || || | || Sbjct 24718 AGGGTTCGTCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGATCAGGAGGG 24777 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | ||||| |||||||| Sbjct 24778 ATACCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCAC 24836 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 ||||| || || || || ||||| || ||||| ||||| |||| Sbjct 24837 CTCCAAGGTGATGGTCTTCCCCGTAAGGGTCTTAACGAAGATCT 24880 >seq1142 Length=33869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| || || ||| ||||||||| ||||| || || || Sbjct 6993 CCTCCTCGGAGTCGGAGAACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGAA 6934 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| ||||||||||| |||||||| || || ||||| || || | ||| Sbjct 6933 AGGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCGCTGCTGATCAGGGGGG 6874 Query 41756 ACGCTCTCCTTGTC 41769 | | ||||||||| Sbjct 6873 ATACCCTCCTTGTC 6860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462292586870000