Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mycena_20chlorophos_20[genbank_20GCA_5F001612595.1_202016-04-02] 25,660 sequences; 43,602,020 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq54 140 2e-28 seq12936 132 3e-26 seq12417 113 3e-20 seq669 104 2e-17 >seq54 Length=724 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 168 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 109 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 108 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 74 >seq12936 Length=4849 Score = 132 bits (146), Expect = 3e-26 Identities = 189/265 (71%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 ||||| ||||||| || |||||||| || || |||||| | ||||||| | || |||| Sbjct 4605 CCAAGATCGAGGGCAAAGGAAACGGCATCAAGACCGTCTTGCCCAACATGGCCGACGTCG 4546 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 | |||||| | || || ||| |||| | || |||| ||||| ||||| || |||| Sbjct 4545 CACGTGCGCTCAGCCGGCCCCCCAGCTACACCACAAAATTCTTCGGCTGCGAGCTCGGCG 4486 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | || ||| || || | ||||||||||||| ||| || ||||| |||| || | Sbjct 4485 CCCAAACGTCGTGCGACGAGAAAAACGAGCGCTACATTGTCAACGGCGCGCACGAC---G 4429 Query 6412 CCAA---GCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAAT 6468 |||| |||| || | || |||||||| || ||| || |||||||| | | Sbjct 4428 CCAACCGCCTGCGCGAGCTGCTCGACGGCTTCATCGACAAATTCGTGCTGTGCAAGTCGT 4369 Query 6469 GCGATAACCCGGAGACCGAGCTTAT 6493 || | ||||| ||||| |||||||| Sbjct 4368 GCAAGAACCCCGAGACGGAGCTTAT 4344 >seq12417 Length=2649 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2144 CTCTCTATTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTTTCGT 2203 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 2204 GGTTATATTTAGCCTTA 2220 >seq669 Length=632 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 531 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 472 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 471 CCCAATATTTAGCTTTA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334842451543460