Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq24 120 3e-22 seq84 104 2e-17 >seq24 Length=290538 Score = 120 bits (132), Expect = 3e-22 Identities = 181/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| | |||| ||||| || |||||| || || || ||||||| ||| || Sbjct 19191 AGGTGGCTGAACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGC 19132 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 ||||| || || || | || ||||| |||||||||||| | |||||| || | ||| Sbjct 19131 TCGTTTGAGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCA 19072 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 ||||| || |||||||| |||||||| |||| ||||| ||||| ||||| || || | Sbjct 19071 AATGATCCTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAAT 19012 Query 16364 GTAGCATCTTTATTACGA-ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 || | ||| || | || ||||| || || |||| | ||| || | || ||||| Sbjct 19011 GT-GGATCGTTGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGG 18953 Query 16423 CATCGTTTCTATGGC 16437 || || || ||||| Sbjct 18952 GATAGTGTCGATGGC 18938 >seq84 Length=171189 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 || |||||||| |||||||| || || ||||| ||||||||| || | ||| ||||| Sbjct 164311 ATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTTTTCAGCCAAAATATG 164252 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGT 16354 || ||||||||||| || ||||| || ||||| ||| | |||||||||| || ||| Sbjct 164251 GCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAAGCGACCAAGCGT 164195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413434705320