Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq123 105 5e-18 >seq123 Length=96366 Score = 105 bits (116), Expect = 5e-18 Identities = 229/340 (67%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||||| | | ||||||||||| || || || |||| || ||| || | Sbjct 1287 ATTCCAAGCACTTAGGACAATCCTTCTATCCGTTGGATTATTTTTAATCTTATTGATGAC 1346 Query 101986 CTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCT-TTATATTCTG 102044 | | ||||| || || |||| || | |||||| | ||| | ||| |||| Sbjct 1347 GTCCATCAATTGATCTACGCCTTTACCCTCATAATC-ATCTTGACAAGTCCCATACTCTG 1405 Query 102045 CTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCAT 102104 | |||||||| ||||| ||||| ||||| || || || ||||| ||| | ||| | | Sbjct 1406 CGCCGAAATGTCTCCATTGAAAGCCATATACCGGACCTAGATCGCCTGCTCTTCTATGGT 1465 Query 102105 AAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAG 102164 || |||| |||||||| | || || | |||||| ||||||| || | ||| || Sbjct 1466 TCAATCCAACTTTATCTAGATATTCTCGACTACCATTCCCATCCCATATATTCACTCCCT 1525 Query 102165 CTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAA 102224 || |||| |||| | || || ||||| || ||||| || || |||||||| | Sbjct 1526 TTGAAGATAAAACTTTACCATCCGTGCATCCTGAGACGAACCATAAGAGCTCTTCAACCA 1585 Query 102225 CACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 | || | ||| |||| || ||||| || | ||| || Sbjct 1586 CTCCACGTAGAAAAACTCGTTTCGTAGTCAATAATGGCAA 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250535184901