Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24 129 7e-25 seq84 95.1 1e-14 seq1 95.1 1e-14 >seq24 Length=290538 Score = 129 bits (142), Expect = 7e-25 Identities = 177/245 (72%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| | ||| || || ||| ||| ||||||||||||| || | ||||| || Sbjct 19182 AACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAG 19123 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || || |||||||| || || || || || ||||| || ||||||||||||||||| Sbjct 19122 AATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCT 19063 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG--CGC 24303 |||||||| || || ||||| || |||||||| || | || || || | || || Sbjct 19062 GAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATCGT 19003 Query 24304 T-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | |||| |||||||| | ||||| | ||||||||||| | ||| || || || || Sbjct 19002 TGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCG 18943 Query 24363 ATAGC 24367 || || Sbjct 18942 ATGGC 18938 >seq84 Length=171189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24156 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 24215 |||||||||| ||| | |||||| ||||| || | ||| ||||| | || || ||| Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 || ||||||||||||| |||||||| ||||| |||||||| || || || |||||| Sbjct 164266 TTCAGCCAAAATATGGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAA 164207 Query 24276 GC 24277 || Sbjct 164206 GC 164205 >seq1 Length=1646047 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG 54502 || || ||||| || || || || ||||| | || |||| |||||||||||| Sbjct 680074 GTTGGGGAAGCATGGGTGAAGTATCGCTCAGACATCAGGGTGTAGGTCTCGATAGCTTTT 680133 Query 54503 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 || || | || ||||| || | || |||||||| | |||||| || |||| ||| Sbjct 680134 TCAATGTTGGATCCGTGAATACCGATGGCCACACGCATGATCATGTGTTGTGGTCGCTCA 680193 Query 54563 ACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 54622 || |||||| ||| || || | ||| ||| || | || || || ||||| ||| Sbjct 680194 ACAATCTTGCCGTTGATGCGGAGTAGGTAAGATCGCTCGAGGGTCTTGAATCCAAAGTAG 680253 Query 54623 TTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 ||||| | ||||||||| ||||| || || | |||| ||| | ||||| Sbjct 680254 TTGTAAGCAAAGTCTCGGTCGTAGATGATGGCAGAGTCGAGCTGCTCCTT 680303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720479350480