Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24 140 3e-28 seq77 104 2e-17 >seq24 Length=290538 Score = 140 bits (154), Expect = 3e-28 Identities = 179/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 |||||||| || || || || || || |||||||| | ||||| || |||||| | Sbjct 18938 GCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAACTGGGCACTCAAGTGGATCTCT 18997 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | | | || | || | ||||| || | ||||| || || || ||||| ||||| Sbjct 18998 GACCAACGATCCACATTTGCTGAGCGATTGATCGCCTTTGCCGCTGTAGAGGGTATCTTC 19057 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 ||||| || || || |||| || |||||||||||||| || ||||||||||| || Sbjct 19058 TTTTCAGGATCATTTGCGTCCATCTTCTGGCTCAAGAAACGAGGACTCATGCCCGGTCTT 19117 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| |||||||||||||| | ||||||||||| || ||||||||| ||| | Sbjct 19118 ACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCTTCACACCGACTTTGCTTGTCTC 19177 Query 117194 CTGTTCA 117200 |||||| Sbjct 19178 TTGTTCA 19184 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || ||||| | || |||||| | || Sbjct 53010 ATGCAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCC 53069 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| | || || | ||||| ||||| ||||| | || || Sbjct 53070 GATACCATTGACAACG-TCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCA 53128 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| ||| ||||| ||||| || |||| || || ||| ||||||||| Sbjct 53129 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAA 53188 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || || || || | || ||| | || || Sbjct 53189 TATCCAGAAGGAATCGACTCTCCACCTTGTCCTTCGATTGCGAGGTGG 53236 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 ||||| || |||||||||| |||||| ||||| || || |||| ||||| || | |||| Sbjct 53681 GACCAACAGCGACTCATCTTCGCGGGAAAACAACTCGAAGACGGCCGCACTCTGAGCGAC 53740 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| |||| || || || || ||||| ||| | || || Sbjct 53741 TACAACATCCAGAAGGAGTCCACCCTTCACCTGGTCTTGCGTTTGCGTGGTGG 53793 >seq77 Length=196091 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || ||||| || || |||||| | || ||||| || | |||| | | | ||||| Sbjct 17894 CTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAG 17835 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| ||||| ||||| | ||||| || |||||||||| ||| ||| Sbjct 17834 TCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAACAGCGACTCATCTTCGCCGGC 17775 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | || ||| | ||||||||| |||||||||||| |||| || Sbjct 17774 AAGCAGCTCGAGGATGGTCGTACCTTGTCCGACTACAATATCCAGAAGGAGTCCACTCTC 17715 Query 40891 CATCTAGTGTTG 40902 || || || ||| Sbjct 17714 CACCTCGTCTTG 17703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218227523760