Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq123 82.4 5e-11 >seq123 Length=96366 Score = 82.4 bits (90), Expect = 5e-11 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 ||||||||||| | | || |||||||| ||||| || | | || |||| || | Sbjct 1287 ATTCCAAGCACTTAGGACAATCCTTCTATCCGTTGGATTATTTTTAATCTTATTGATGAC 1346 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTT---AAGACCTTGATATTC 97406 | | | |||||||| ||||||| || |||||| | ||| ||| || ||| || Sbjct 1347 GTCCATCAATTGATCTACGCCTTTACCCTCATAATCAT-CTTGACAAGTCC--CATACTC 1403 Query 97407 TGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATC 97466 ||| || ||||| |||||||| || ||||| || || || || || ||| || ||||| Sbjct 1404 TGCGCCGAAATGTCTCCATTGAAAGCCATATACCGGACCTAGATCGCCTGCTCTTCTATG 1463 Query 97467 ACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC 97526 || |||| ||||||| ||| | | ||||| ||||||| || | ||| || Sbjct 1464 GTTCAATCCAACTTTATCTAGATATTCTCGACTACCATTCCCATCCCATATATTCACTCC 1523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346783361809070