Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 9e-12 >seq24 Length=290538 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||||| || || ||||| ||||| || | ||| | ||| | Sbjct 53010 ATGCAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCC 53069 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||| || || || || || ||||| ||||||||||| Sbjct 53070 GATACCATTGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 53129 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || || | || || | ||||| | || || ||| Sbjct 53130 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAAT 53189 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | || | || | || || ||||||||||| Sbjct 53190 ATCCAGAAGGAATCGACTCTCCACCTTGTCCTTCGATTGCGAGGTGGTAT 53239 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 124637 AGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAG 124696 ||| ||||| ||||| || ||||| | || ||||| || ||||| |||||||||||| | Sbjct 53385 AGAGGGTATCCCACCCGACCAACAGCGTCTGATTTTCGCCGGAAAGCAATTAGAGGATGG 53444 Query 124697 TCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTT 124756 ||||| | || || || ||||| ||||| || || ||||| | || || ||| | Sbjct 53445 CCGAACCCTGTCTGACTACAACATTCAGAAAGAGTCCACCTTGCACCTCGTCTTGCGTCT 53504 Query 124757 ACGAGGTGGTAT 124768 || |||||||| Sbjct 53505 CCGTGGTGGTAT 53516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454574076800