Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq77 104 2e-17 seq24 89.7 4e-13 >seq77 Length=196091 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| || | ||||| || ||||| || || || ||||| ||| Sbjct 17688 ACCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGA 17747 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || |||||||||||| || || ||| ||||||| ||||| || ||||| || Sbjct 17748 CAAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGG 17807 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || || || | |||| ||||||| | |||||| Sbjct 17808 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGAC 17867 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||| | ||| | ||| || || || || Sbjct 17868 CTCAAGGGTGATCGTCTTACCCGTAAG 17894 >seq24 Length=290538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||| | || | ||||| || || || || || || ||||| ||| Sbjct 53238 TACCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGG 53179 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || ||||| || || ||| ||||||||||||||||||| || | Sbjct 53178 AGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTG 53119 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || ||| || | || | ||| || | |||| Sbjct 53118 GGATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGA 53059 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | || |||||||| || || ||||| || || ||||| Sbjct 53058 CCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| || || || || ||| |||| | ||||| ||||||||||| || ||||||||| Sbjct 52889 TCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGATCGGGAGGAATACCCTCCTTG 52830 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | || | |||||| | ||| ||||| | ||| | Sbjct 52829 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGACGACTCAACCTCAAGGGTGATG 52770 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| || ||||| || || |||||||| Sbjct 52769 GTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829601616492