Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq24 118 1e-21 >seq24 Length=290538 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || | || || || |||| || |||||||| || ||||| Sbjct 53200 TCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAG 53141 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| |||||||| || | || | | |||||||||| ||| || ||||| ||| Sbjct 53140 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTCGCTTTGA-CGTT 53082 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | | ||| |||||| || || | |||||| || ||||| || || |||||||| Sbjct 53081 GTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTAC 53022 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 53021 GAAGATTTGCAT 53010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816520694280