Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq24 125 5e-24 seq77 93.3 3e-14 >seq24 Length=290538 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| || ||||||||||| ||| ||| |||| Sbjct 53221 AGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAGAGCGTTCGGCCGTCT 53162 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| ||||| ||||| |||||||| || || | | ||||||||| Sbjct 53161 TCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCC 53102 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | | || | ||||| ||||||||| || | |||||| || Sbjct 53101 TGGATC-TTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACCTCAAGCGTGATAGT 53043 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || ||||| ||||| Sbjct 53042 CTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 |||||||||| || ||| |||| || | |||||||| ||||| || | ||||| | Sbjct 52912 TGTAGTCGGAAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTT 52853 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 | ||| || | | ||||||||| ||||| ||| | | | | || | |||| Sbjct 52852 GATCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGG 52793 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || || | |||||||| |||||||| || ||||| || ||||||||||| Sbjct 52792 ACGACTCAACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTGACGAAGATCTGCAT 52735 >seq77 Length=196091 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||||| || ||||| | ||| || ||||| || |||||||||||| Sbjct 17689 CCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAC 17748 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||||||||| ||||| ||||| ||||| |||||| || Sbjct 17749 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGG 17808 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | |||| || | || ||||| Sbjct 17809 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 17868 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | ||||| || || || || || Sbjct 17869 TCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071405446560