Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq24 118 1e-21 seq84 91.5 1e-13 >seq24 Length=290538 Score = 118 bits (130), Expect = 1e-21 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 ||||||||| ||||||||||| ||||| ||||||||||| || | ||| || || | || Sbjct 19132 CTCGTTTGAGAATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGC 19073 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 |||||| || |||||||| ||||| || || |||||||| || | |||||||||| Sbjct 19072 AAATGATCCTGAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCA 19018 >seq84 Length=171189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||||||||| || | || ||||| | |||||||||||| | ||||||||| || ||| Sbjct 164305 TCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTTTTCAGCCAAAATATGGCTGCA 164246 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 ||||| ||||| ||||| || || || || ||||| || ||||| || Sbjct 164245 AATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAAGCGACCAAGCG 164196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511127008600