Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 >seq1 Length=1646047 Score = 152 bits (168), Expect = 1e-31 Identities = 664/1044 (64%), Gaps = 65/1044 (6%) Strand=Plus/Minus Query 248734 ATGGTCGCCGATGACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCG 248793 ||| |||||||||||||| || ||| | ||||||| | | | || ||| || Sbjct 680342 ATGATCGCCGATGACGTCTTCAAAGTCGTCATGGACAACAAGGAGCAGCTCGACTCTGCC 680283 Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 || ||||| | ||| || | ||| | | ||||| ||||| || || ||| ||| Sbjct 680282 ATCATCTACGACCGAGACTTTGCTTACAACTACTTTGGATTCAAGACCCTCGAGCGATCT 680223 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || || ||| || | |||||||| || || ||| || |||||| | ||||| ||| Sbjct 680222 TACCTACTCCGCATCAACGGCAAGATTGTTGAGCGACCACAACACATGATCATGCGTGTG 680163 Query 248914 GCTGTCGGGATTCACAAGGATG--ACATAGAGAGCGTGCTCGAGACGTACACCGGAATGA 248971 || |||| |||||| |||| |||| || | | ||||||| |||||| ||| Sbjct 680162 GCCATCGGTATTCAC--GGATCCAACATTGAAAAAGCTATCGAGACCTACACCCTGATGT 680105 Query 248972 GTGAACGCTGGATGACACATGCCACACCGAC----------------------------- 249002 ||| || | | || ||||| | || || Sbjct 680104 CTGAGCGATACTTCACCCATGCTTCCCCAACTGTGAGTTACTGATCTGGTTCTATCTGAC 680045 Query 249003 ----GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCC 249057 |||||||||||||||||| | ||| | ||| || || ||||| || | || Sbjct 680044 GTCAGCTCTTCAACGCCGGTACACCTCACCC-TCAAATGTCGTCCTGCTTCCTCGTCGCA 679986 Query 249058 ATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG---GCGAAGATT 249114 ||||| || ||||| ||||||| || || || || || || ||| || ||||| Sbjct 679985 ATGCAGGATGACTCGATCGACGGTATCTACGAGACCCTCAA---GACTTGTGCCAAGATC 679929 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 || || ||| || || ||||||||| | || ||||||||| || ||||| || ||| Sbjct 679928 TCCAAGACCGCAGGTGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTAC 679869 Query 249175 ATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCC 249234 || ||||||||||| | | ||||| || ||| | || ||| ||| || || Sbjct 679868 ATTGCCGGTACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCC 679809 Query 249235 ACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTG 249291 ||||| | | | || | || | || | ||| ||| | || ||||| || | Sbjct 679808 ACCGCTCGTTACGTCGATCAAGGTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTC 679749 Query 249292 GAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAG 249351 || ||||| |||||| | || || ||||| ||| | |||||| ||||||| || Sbjct 679748 GAGCCTTGGCATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAA 679689 Query 249352 CTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGC 249411 | | || || ||||| ||||||| |||||| |||| || | |||||| || Sbjct 679688 GAGGTCCGCGCCCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGA 679629 Query 249412 GTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATCGA 249470 ||| | | ||||| |||||||| | | | || | || ||||||| || ||| Sbjct 679628 GTCGAATCTGACGGTGATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGG-TCTTTCCGA 679570 Query 249471 TCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATCG-- 249526 ||||||| || || || | |||| || ||| ||||| |||| | Sbjct 679569 CTGCCACGGCGAAGAGTTTGAGC--GCCTGTACGAGAGCTACGAGAAGGCTGGCAAGGGT 679512 Query 249527 -GCAAGACAATCAAGGCTCGGACCCTT---TTTGCGAAGGTGGTGGAGTCCCAGATAGAG 249582 ||||||| |||||||| | || ||| || || | | | ||| |||||| ||| Sbjct 679511 CGCAAGACCATCAAGGCACAGAAGCTTTGGTTCGCCA---TCCTCGAGGCCCAGACCGAG 679455 Query 249583 ACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCA 249641 || || || | | || | | ||||||||| ||||||||| ||||||| ||| Sbjct 679454 ACCGGTAACCCCT-TCATGCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCA 679396 Query 249642 TCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGA 249701 || || || ||| || || || || || | ||| | ||| | ||||| | || Sbjct 679395 CCTCGGGACGATCAAGTCATCCAACCTATGCACTGAGATCATTGAGTACTCTGCACCAGA 679336 Query 249702 GGAGATTGCCGTCTGCAACCTGGC 249725 ||| | || ||||||||| |||| Sbjct 679335 TGAGGTCGCAGTCTGCAACTTGGC 679312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764322597568