Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq24 102 6e-17 seq77 93.3 3e-14 >seq24 Length=290538 Score = 102 bits (112), Expect = 6e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||| | || |||| ||| || ||| ||||||||| |||||||||||| || Sbjct 53793 CCACCACGCAAACGCAAGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 53734 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || ||||||||||| ||||| || | ||||||||||| ||||| Sbjct 53733 AGAGTGCGGCCGTCTTCGAGTTGTTTTCCCGCGAAGATGAGTCGCTGTTGGTCAGGAGGA 53674 Query 45230 ACACCCTCC 45238 | ||| ||| Sbjct 53673 ATACCTTCC 53665 >seq77 Length=196091 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || || || || | ||| || ||| ||||||||| || ||||||||| | Sbjct 17689 CCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAC 17748 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || |||||||| || | |||||||||||||| || Sbjct 17749 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGG 17808 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | ||||| ||| ||| Sbjct 17809 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 17868 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAG 45315 || | ||| |||||||| ||||| || Sbjct 17869 TCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074472938171