Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 257 1e-63 seq24 116 3e-21 >seq1 Length=1646047 Score = 257 bits (284), Expect = 1e-63 Identities = 650/986 (66%), Gaps = 43/986 (4%) Strand=Plus/Plus Query 23026 CGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACA 23085 |||||| | ||||| || || ||||| ||| | | |||||| | || || || || Sbjct 679308 CGAGGCCAAGTTGCAGACTGCGACCTCATCTGGTGCAGAGTACTCAATGATCTCAGTGCA 679367 Query 23086 TAGATTGCTACACTTTATCGTGCCCAAATTGCTCT-GGTTGCTTTTTCGATTGCACGAAT 23144 ||| ||| |||| ||||| ||| | |||| | ||||| ||| ||| | | Sbjct 679368 TAGGTTGGATGACTTGATCGT-CCCGAGGTGCTGTTGGTTGGATTTGGCGTTGGCGGCGT 679426 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 | ||||| |||||| | || | || |||||| ||| | ||||| ||| || ||| | Sbjct 679427 CTTTGTAAAGCATGAAGGGGTTACCGGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAAA 679486 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAAC 23263 |||| || | | ||| || ||| ||| | | |||||| | | ||||| Sbjct 679487 GCTTCTGTGCCTTGATG-GTCTTGCGACCCTTGCCAGCCTTCTCGTAGCTCTCGTACAG- 679544 Query 23264 GCG-TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATG 23320 ||| ||||| || | |||| ||||||| || ||||| | | ||| || ||||| Sbjct 679545 GCGCTCAAACTCTTCGCCGTGGCAGTCGGAAAGACCGGGGCACTCTGCA--GGGCACATT 679602 Query 23321 AGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 | | |||| |||| ||| || || |||| |||||||| | ||||| || ||| Sbjct 679603 AAAGTCCAATCACCGTCAGATTCGACTCGCTTCATGAAAAGATCTGAGATCCACAGTGCG 679662 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 |||||||| || |||||||| ||||| || |||||| |||||| | || | ||| Sbjct 679663 TAGAACAGGTCTCGGGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGAAGGTCGAGGAAG 679722 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || || || |||||||| ||||||||||||| |||||| || ||||||| ||| ||| Sbjct 679723 TCAAAGACATCGGCATGCCAAGGCTCGAGGTAAATGGCAAATGCACCCGGTCGCTTGTTG 679782 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || || |||||||||||||| || ||| | | | ||| ||||| ||||| | |||| Sbjct 679783 CCACCTTGATCGACGTAACGAGCGGTGGCATCGAAGGCTCGGAGCATGGGCACAATACCG 679842 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| ||| | || || | || || ||||| || | |||||| | |||| Sbjct 679843 TTGGAGTAGCCATTTGTACCGGCAATGTAAGAGCCCTTTGCCCGGATGTTGTGGATGTGG 679902 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | ||| || || || | | || || ||| | || || || || || |||||||| Sbjct 679903 AGACCGATACCACCTGCGGTCTTGGAGATCTTGGCACAAGTCTTGAGGGTCTCGTAGATA 679962 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || ||||| ||| || | | ||||| | ||| || || |||||||| | | || Sbjct 679963 CCGTCGATCGAGTCATCCTGCATTGCGACGAGGAAGCAGGACGACATTTGAGGGTGAGGT 680022 Query 23741 GTAGCGGC-------------------------CGAGAACAGT--------GTCGGGCTG 23767 ||| |||| | ||| |||| || ||| Sbjct 680023 GTACCGGCGTTGAAGAGCTGACGTCAGATAGAACCAGATCAGTAACTCACAGTTGGGGAA 680082 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 || || || ||||||| | ||||| || |||| || ||||| || ||||||| Sbjct 680083 GCATGGGTGAAGTATCGCTCAGACATCAGGGTGTAGGTCTCGATAGCTTTTTCAATGTTG 680142 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 |||||| ||||||||||| || ||||| ||||||| ||| |||| ||| || | | Sbjct 680143 GATCCGTGAATACCGATGGCCACACGCATGATCATGTGTTGTGGTCGCTCAACAATCTTG 680202 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 ||||| || || || || || || | | || || |||||||| |||| || | Sbjct 680203 CCGTTGATGCGGAGTAGGTAAGATCGCTCGAGGGTCTTGAATCCAAAGTAGTTGTAAGCA 680262 Query 23948 AAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || |||| | ||||| || Sbjct 680263 AAGTCTCGGTCGTAGATGATGGCAGA 680288 >seq24 Length=290538 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || ||||| || ||||| | || || ||| ||||| Sbjct 53010 ATGCAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCC 53069 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | |||||| || || ||||||||| || | || || || ||| Sbjct 53070 GATACCATTGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 53129 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | |||||| || | ||| || || Sbjct 53130 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAAT 53189 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||||||||| || || || ||| || || | || |||| Sbjct 53190 ATCCAGAAGGAATCGACTCTCCACCTTGTCCTTCGATTGCGAGGTGGTA 53238 Score = 111 bits (122), Expect = 1e-19 Identities = 221/322 (69%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 |||||| | || || || | || || || || || || |||||| | || || || | Sbjct 18857 GAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCGCC 18916 Query 57867 -GAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 | ||| || || ||| | || ||||| || || || ||| |||||||| | Sbjct 18917 CGCCGAACATAC-CTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAA 18975 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG-CCACGTTCGCCGAGAGGCTAATCGCGT 57984 ||| || |||| ||||| | | ||| |||| || || ||| | | ||||| | Sbjct 18976 CTGGGCACTCAAGTGGATCTCTGAC-CAACGATCCACATTTGCTGAGCGATTGATCGCCT 19034 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | ||||| || || ||||| |||||||| || |||||| | || || ||| | |||| Sbjct 19035 TTGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTTCTGGCTCAAGA 19094 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 |||| || || |||||||| || || || |||||| | || ||||| |||||||||| Sbjct 19095 AACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTC 19154 Query 58105 TCCATACTGATTTTGCGTGCCT 58126 | || || || ||||| || || Sbjct 19155 TTCACACCGACTTTGCTTGTCT 19176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765558615920