Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq24 134 2e-26 >seq24 Length=290538 Score = 134 bits (148), Expect = 2e-26 Identities = 178/245 (73%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| | ||| || || ||| ||| ||||||||||||| || | ||||| || Sbjct 19182 AACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAG 19123 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || || |||||||| || || || || || ||||| || ||||| || |||||||| Sbjct 19122 AATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCT 19063 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC 33750 ||||||||||| || ||||| || |||||||| || | || ||| || | || || Sbjct 19062 GAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATCGT 19003 Query 33751 T-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | |||| |||||||| | ||||| | ||||||||||| | ||| || || || || Sbjct 19002 TGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCG 18943 Query 33810 ATGGC 33814 ||||| Sbjct 18942 ATGGC 18938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816411219280