Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 seq24 129 9e-25 >seq1 Length=1646047 Score = 167 bits (184), Expect = 3e-36 Identities = 368/545 (68%), Gaps = 10/545 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 ||||| ||| || ||| || | ||||| |||||| || | | |||| | | || Sbjct 679859 ACAAATGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGT 679800 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| || || ||||| || || || || || | ||| | ||| | || |||||| Sbjct 679799 TACGTCGATCAAGGTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTGG 679740 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || || || || |||||||| |||| | ||||| ||| ||| ||||||| || Sbjct 679739 CATGCCGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGGTCCGC 679680 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC--- 97043 ||| | ||| |||| || ||||| ||| | ||||| | ||||||||||| ||| | Sbjct 679679 GCCCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATCT 679620 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||||||| | |||| |||||||||| | || |||||||| ||||| ||| Sbjct 679619 GACGGTG---ATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGGTCTTTCCGACTGCCAC 679563 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162 ||||||||||||||| | |||| | ||||||| | | ||| | || |||| Sbjct 679562 GGCGAAGAGTTTGAGCGCCTGTACGAGAGCTACGAGAAGGCTGGCAAGGGTCGCAAGACC 679503 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | |||| |||| || ||| |||||| | ||| ||| ||||| || | | Sbjct 679502 A-TCAAGGCAC-AGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTAACC 679445 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| || ||||| || ||| || ||| |||||||| ||| | || || | Sbjct 679444 CCTTCATGCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCACCTCGGGACGA 679385 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAG 97341 ||||| ||||| || ||||| || || | |||||| | | || || ||| |||| Sbjct 679384 TCAAGTCATCCAACCTATGCACTGAGATCATTGAGTACTCTGCACCAGATGAGGTCGCAG 679325 Query 97342 TTTGC 97346 | ||| Sbjct 679324 TCTGC 679320 Score = 87.8 bits (96), Expect = 3e-12 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 98037 ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTG--ATCGATATGGCTGCCGACA 98094 ||||||||||| |||||||||||| | ||| | |||| |||||| | || || ||| Sbjct 678527 ATCTACAAGACCGTCTGGGAGATTTC--ACAAAAGGCTGTCATCGATCTCGCCGCAGACC 678470 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 |||| | || || |||||| ||| ||| |||| | || ||||| | || ||| Sbjct 678469 GAGGCGCCTTTATCGACCAGTCTCAGTCGCTCAACATCCACCTTGCCAACCCATCCTTTT 678410 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATG-TAC 98213 | | || ||||| ||||| |||| |||||| | ||| |||||||| || ||| ||| Sbjct 678409 CCCAACTCACCTCGATGCACTTCTACGGATGGAAGAGGGGTCTCAAGACTGG-ATGCTAC 678351 Query 98214 TATCT 98218 || || Sbjct 678350 TACCT 678346 >seq24 Length=290538 Score = 129 bits (142), Expect = 9e-25 Identities = 219/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGAT-CCGCA 125317 || ||| | ||||| || | |||||| |||||||||| |||||| ||| |||| Sbjct 18857 GAAAACATCCACTCTGAGACCTACTCTCTCCTGATTGACACGTACATCAAAGATGCCGCC 18916 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 |||| | || || | || |||||||| | || | ||| | || ||||| | Sbjct 18917 CGCCGAACATAC-CTATTCGAAGCCATCGACACTATCCCATGTATCCAAAAGAAGGCCAA 18975 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| | ||||||| |||| | || | | || || || || | || || Sbjct 18976 CTGGGCACTCAAGTGGATCTCTGACCAACGATCCACATTTGCTGAGCGATTGATCGCCTT 19035 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 ||||| |||||||| ||||||||||| || |||||| ||||||| ||||||||||| Sbjct 19036 TGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTTCTGGCTCAAGAA 19095 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 || |||||||||||||| || || | |||||| | || || ||||||||||| || Sbjct 19096 ACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCGAGACGAGGGTCT 19155 Query 125558 ACACTGTGACTTTGC 125572 ||| |||||||| Sbjct 19156 TCACACCGACTTTGC 19170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057801250760