Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 250 6e-61 seq24 102 2e-16 >seq1 Length=1646047 Score = 250 bits (276), Expect = 6e-61 Identities = 507/750 (68%), Gaps = 6/750 (1%) Strand=Plus/Minus Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| || || || | | | || || ||||| || ||||| || | |||| |||| || Sbjct 680034 CAACGCCGGTACACCTCACCCTCAAATGTCGTCCTGCTTCCTCGTCGCAATGCAGGATGA 679975 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 || ||||| ||||||| || || || |||| |||||| || ||||||| ||||| Sbjct 679974 CTCGATCGACGGTATCTACGAGACCCTCAAGACTTGTGCCAAGATCTCCAAGACCGCAGG 679915 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGG 363752 || || ||| | |||||||| | || ||| || | ||||||| ||| ||| Sbjct 679914 TGGTATCGGTCTCCACATCCACAACATCCGGGCAAAGGGCTCTTACATTGCCGGTACAAA 679855 Query 363753 GGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGT 363812 || ||||| || || | || |||||||| || | || || || || | ||||| Sbjct 679854 TGGCTACTCCAACGGTATTGTGCCCATGCTCCGAGCCTTCGATGCCACCGCTCGTTACGT 679795 Query 363813 CGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGC 363872 ||| || ||||| ||||| || || ||||| || || ||||||||| ||||| Sbjct 679794 CGATCAAGGTGGCAACAAGCGACCGGGTGCATTTGCCATTTACCTCGAGCCTTGGCATGC 679735 Query 363873 CGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC-ACGGGAA--AAGAGGAATTGCGTGC 363929 |||| | ||||| || || || || || || ||| |||| || |||||| | || || Sbjct 679734 CGATGTCTTTGACTTCCTCGACCTTCGCAAGAACCACGGCAAGGAAGAGG---TCCGCGC 679678 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGG 363989 || || |||||||| ||||| ||| | || || | ||| |||||||| || || | | Sbjct 679677 CCGAGACCTGTTCTACGCACTGTGGATCTCAGATCTTTTCATGAAGCGAGTCGAATCTGA 679618 Query 363990 TAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGA 364049 ||||| | | | ||||| || || || ||||||||||| || || Sbjct 679617 CGGTGATTGGACTTTAATGTGCCCTGCAGAGTGCCCCGGTCTTTCCGACTGCCACGGCGA 679558 Query 364050 CGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCC 364109 || | || || ||||| | || || || || |||| ||| ||||| || Sbjct 679557 AGAGTTTGAGCGCCTGTACGAGAGCTACGAGAAGGCTGGCAAGGGTCGCAAGACCATCAA 679498 Query 364110 CGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATAT 364169 ||||||||||| ||||| |||||| | || | |||| ||||| || | |||| || Sbjct 679497 GGCACAGAAGCTTTGGTTCGCCATCCTCGAGGCCCAGACCGAGACCGGTAACCCCTTCAT 679438 Query 364170 GTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCA 364229 | | |||||||| | |||| ||| |||||||| |||||||| || || || || Sbjct 679437 GCTTTACAAAGACGCCGCCAACGCCAAATCCAACCAACAGCACCTCGGGACGATCAAGTC 679378 Query 364230 GAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 ||||||||| || ||||| ||||| ||| | || || || ||| || || || || Sbjct 679377 ATCCAACCTATGCACTGAGATCATTGAGTACTCTGCACCAGATGAGGTCGCAGTCTGCAA 679318 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | | || ||| | || ||||| || || || Sbjct 679317 CTTGGCCTCGCTTGCTCTTCCTGCCTTCGT 679288 >seq24 Length=290538 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGAT----GAACAATGAACGTTCATTCGCGGAACG 22493 || ||||| | ||||| || || ||||| || ||| || | |||| || || || Sbjct 18965 AAGAAGGCCAACTGGGCACTCAAGTGGATCTCTGACCAACGATCCA-CATTTGCTGAGCG 19023 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 | || || ||||| | || || || || |||||||| ||| ||||| | ||||| Sbjct 19024 ATTGATCGCCTTTGCCGCTGTAGAGGGTATCTTCTTTTCAGGATCATTTGCGTCCATCTT 19083 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 ||||| || ||||| | | | ||||| ||||| || || ||||| ||| | || || Sbjct 19084 CTGGCTCAAGAAACGAGGACTCATGCCCGGTCTTACATTCTCAAACGAGCTCATCTCGCG 19143 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGT 22644 ||| ||||||||||| ||||| ||||| ||| Sbjct 19144 AGACGAGGGTCTTCACACCGACTTTGCTTGT 19174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351078418082