Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 seq77 84.2 2e-11 >seq24 Length=290538 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| || || || | || | ||||| ||||| || || ||||| ||| Sbjct 53236 CCACCTCGCAATCGAAGGACAAGGTGGAGAGTCGATTCCTTCTGGATATTGTAGTCGGAG 53177 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 53176 AGCGTTCGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCAGGTGGG 53117 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| |||| | || | ||||||| || |||| Sbjct 53116 ATACCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCAATGGTATCGGACGATTCGACC 53057 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| || || |||||||| || ||||| Sbjct 53056 TCAAGCGTGATAGTCTTGCCGGTAAGGGTCTTTACGAAGATTTGCAT 53010 >seq77 Length=196091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || || ||||| ||| || ||| || ||||| ||||||||||| Sbjct 17719 GTGGACTCCTTCTGGATATTGTAGTCGGACAAGGTACGACCATCCTCGAGCTGCTTGCCG 17778 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | ||||| ||||| || ||||| || || ||||| ||| || |||| Sbjct 17779 GCGAAGATGAGTCGCTGTTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 17838 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAG 131213 | | || | || || | |||||||| || | ||| | || ||||| || || Sbjct 17839 ACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAG 17894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011909075840