Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq24 134 2e-26 seq84 95.1 2e-14 >seq24 Length=290538 Score = 134 bits (148), Expect = 2e-26 Identities = 178/245 (73%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| | ||| || || ||| ||| ||||||||||||| || | ||||| || Sbjct 19182 AACAAGAGACAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAG 19123 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || |||||||| || || || || || ||||| || ||||||||||||||||| Sbjct 19122 AATGTAAGACCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCT 19063 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG--CGC 32829 |||||||| || || ||||| || |||||||| || | || ||| || | || || Sbjct 19062 GAAAAGAAGATACCCTCTACAGCGGCAAAGGCGATCAATCGCTCAGCAAATGTGGATCGT 19003 Query 32830 T-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | |||| |||||||| | ||||| | ||||||||||| | ||| || || || || Sbjct 19002 TGGTCAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCG 18943 Query 32889 ATAGC 32893 || || Sbjct 18942 ATGGC 18938 >seq84 Length=171189 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 |||||||||| ||| | |||||| ||||| || | ||| ||||| | || || ||| Sbjct 164326 CCCTCGTCTCGCGAAATCAGTTCGTTTGAAAAAGTCAATCCAGGCATCAATCCTCGTTTT 164267 Query 32742 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 32801 || ||||||||||||| |||||||| ||||| |||||||| || || || |||||| Sbjct 164266 TTCAGCCAAAATATGGCTGCAAATGACCCAGAGAAGAAAATGCCCTCGACACACGCAAAA 164207 Query 32802 GC 32803 || Sbjct 164206 GC 164205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630804019600