Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq24 123 3e-23 >seq24 Length=290538 Score = 123 bits (136), Expect = 3e-23 Identities = 224/323 (69%), Gaps = 10/323 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| |||||||| || || | ||| || |||||| | | Sbjct 19173 CAAGCAAAGTCGGTGTGAAGACCCTCGTCTCGCGAGATGAGCTCGTTTGAGAATGTAAGA 19114 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | |||||||||||||||||||| || || || ||||| || ||||| || Sbjct 19113 CCGGGCATGAGTCCTCGTTTCTTGAGCCAGAAGATGGACGCAAATGATCCTGAAAAGAAG 19054 Query 93212 ATACCTTCCACGGCTGCAAATGCCA-CAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 ||||| || || || ||||| || | |||| || || ||||| || || || || | Sbjct 19053 ATACCCTCTACAGCGGCAAAGGCGATCAAT-CGCTCAGCAAA---TGTGG-ATCGTTGGT 18999 Query 93271 ----GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 |||||| || | ||||| | ||| || || | ||||| || | || ||||| | Sbjct 18998 CAGAGATCCACTTGAGTGCCCAGTTGGCCTTCTTTTGGATACATGGGATAGTGTCGATGG 18939 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 | | |||||||| ||| | | | |||| ||||| || || || | ||||| | Sbjct 18938 CTTCGAATAGGTATGTTCGGCGGGCGGCATCTTTGATGTACGTGTCAATCAGGAGAGAGT 18879 Query 93387 ACATTTCAGAATGGACATTCTCC 93409 | | ||||| |||| || ||| Sbjct 18878 AGGTCTCAGAGTGGATGTTTTCC 18856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859748925240