Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq24 132 4e-26 seq77 111 1e-19 >seq24 Length=290538 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| ||||| || ||| | || Sbjct 53010 ATGCAAATCTTCGTAAAGACCCTTACCGGCAAGACTATCACGCTTGAGGTCGAATCGTCC 53069 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | ||||| || || || |||||||||||||| ||||| ||||| Sbjct 53070 GATACCATTGACAACGTCAAAGCGAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 53129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | || || ||| || ||||||| ||||| Sbjct 53130 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAAGACGGCCGAACGCTCTCCGACTACAAT 53189 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || | || | |||||||| || ||| Sbjct 53190 ATCCAGAAGGAATCGACTCTCCACCTTGTCCTTCGATTGCGAGGTGGT 53237 Score = 102 bits (112), Expect = 7e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 22318 GAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 |||||||| |||||||| ||||| ||||| || || ||||| || || ||||||||| | Sbjct 53386 GAGGGTATCCCACCCGACCAACAGCGTCTGATTTTCGCCGGAAAGCAATTAGAGGATGGC 53445 Query 22378 CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || ||| | || || ||||||||||| ||||| |||||| | || | || ||||| | Sbjct 53446 CGAACCCTGTCTGACTACAACATTCAGAAAGAGTCCACCTTGCACCTCGTCTTGCGTCTC 53505 Query 22438 CGCGGAGGT 22446 || || ||| Sbjct 53506 CGTGGTGGT 53514 Score = 100 bits (110), Expect = 2e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | ||||| || || |||| ||||| || || | || Sbjct 52735 ATGCAGATCTTCGTCAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 52794 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||||||||| ||||||||| Sbjct 52795 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 52854 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 || || | || || |||||||| || | ||||| ||| ||| | ||||| |||| Sbjct 52855 CAGCGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGAACCCTTTCCGACTACA 52912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || || || ||| | | || ||| | ||| | |||| Sbjct 52484 ACTGGCAAGACTATCACCCTCGAGGTTGAATCTTCGGACACCATTGACAACGTCAAGGCC 52543 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| ||||| ||||| || | || || ||||||||| Sbjct 52544 AAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGATTGATCTTCGCCGGCAAA 52603 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||| | |||||| ||| ||| |||| || |||| Sbjct 52604 CAGCTTGAGGATGGCCGAACCCTCTCAGACTACA 52637 >seq77 Length=196091 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||| ||| |||| ||||| || || || | || || | ||| || |||| Sbjct 17891 ACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCGGACACGATCGACAATGTCAAGTCC 17832 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| |||||||| ||||| || || || || |||||||| Sbjct 17831 AAGATCCAGGACAAGGAGGGTATCCCACCCGACCAACAGCGACTCATCTTCGCCGGCAAG 17772 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| || ||| | ||||| ||||| || || || || ||||| | || Sbjct 17771 CAGCTCGAGGATGGTCGTACCTTGTCCGACTACAATATCCAGAAGGAGTCCACTCTCCAC 17712 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||| | |||| || ||| Sbjct 17711 CTCGTCTTGAGGCTGCGAGGTGGT 17688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727227569315