Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naematelia_20encephala_20[genbank_20GCA_5F002105065.1_202017-04-20] 151 sequences; 19,786,307 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq77 140 6e-28 seq24 111 3e-19 seq5 84.2 4e-11 >seq77 Length=196091 Score = 140 bits (154), Expect = 6e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | ||| || | ||| || |||||||| || ||||| || || ||||| Sbjct 17689 CCACCTCGCAGCCTCAAGACGAGGTGGAGAGTGGACTCCTTCTGGATATTGTAGTCGGAC 17748 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| ||||||| |||||||||||||| Sbjct 17749 AAGGTACGACCATCCTCGAGCTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCGGGTGGG 17808 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||| ||||| | || || || Sbjct 17809 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACC 17868 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || ||||| ||| Sbjct 17869 TCAAGGGTGATCGTCTTACCCGTAAGG 17895 >seq24 Length=290538 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || ||||| || | ||||| || | ||| || |||||||| || | || |||||| Sbjct 52635 TAGTCTGAGAGGGTTCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGTTGG 52576 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| ||||| || |||||||| || ||||| ||||||||| || |||||||| | Sbjct 52575 TCGGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAA 52516 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| || || | |||||| || || || || ||| Sbjct 52515 GATTCAACCTCGAGGGTGATAGTCTTGCCAGTAAGG 52480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | ||| | ||||||||||| || ||||| || || || Sbjct 53513 CCACCACGGAGACGCAAGACGAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGAC 53454 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||||| ||||| |||||||| || || | |||||||||||||| Sbjct 53453 AGGGTTCGGCCATCCTCTAATTGCTTTCCGGCGAAAATCAGACGCTGTTGGTCGGGTGGG 53394 Query 68355 ATGCCTTC 68362 || || || Sbjct 53393 ATACCCTC 53386 >seq5 Length=49988 Score = 84.2 bits (92), Expect = 4e-11 Identities = 181/266 (68%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 225410 TTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGAC 225469 |||| |||||| || | || | | ||| || ||| ||||| ||||||||||| || Sbjct 47493 TTCTGCTCGTAGTGCATGATATCTGTGCAGACATTGTCCAGGAATCCAGAGTCGTGCGAA 47434 Query 225470 ACAATGATGGACGACACGTTCGTCAGGCCCTTG--AGGTGCGTGAT-GAGCCATGCCACG 225526 || || ||| | | || || | ||| ||| | | || | |||||| |||||| Sbjct 47433 ACGATCATGCAGGTCATGTCGGGGAGG---TTGCAAAGATATTGTTCGAGCCAAGCCACG 47377 Query 225527 --TTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGA 225584 |||| || |||| ||| || |||||||| || ||||| || ||||| ||| | |||| Sbjct 47376 GTTTGC--ACATCCAAGTGATTGGTAGGTTCATCGAGAAGGAGAATGTCGGCACCGATGA 47319 Query 225585 GGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAAA 225644 | || || || | || |||||||| ||||| || || || || || ||| | | Sbjct 47318 GCATAGCACGGGCAAGCTCAAGCTTCATCTTCCATCCACCTGAAAGAGATGCGACAGGAT 47259 Query 225645 CAGAGTGCTTAGCTTCGTCAAAGCCG 225670 || ||||| | ||| ||||||| Sbjct 47258 CATGCTGCTTTTCGTCGGAAAAGCCG 47233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620660437720